A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal

High diversity and abundance of putative polyphosphate-accumulating Tetrasphaera-related bacteria in activated sludge systems

(2011) Hien Thi Thu Nguyen et al.   FEMS MICROBIOLOGY ECOLOGY

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Analysis of the Fine-Scale Population Structure of "Candidatus Accumulibacter phosphatis" in Enhanced Biological Phosphorus Removal Sludge, Using Fluorescence In Situ Hybridization and Flow Cytometric Sorting

(2010) J. M. Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial community analysis of activated sludge: an evaluation of four commonly used DNA extraction methods

(2010) Louise Vanysacker et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Extracellular DNA is abundant and important for microcolony strength in mixed microbial biofilms

(2010) Dominik Marek Dominiak et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic array analysis of ‘Candidatus Accumulibacter phosphatis’-enriched enhanced biological phosphorus removal sludge

(2010) Shaomei He et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for bacteriophage activity causing community and performance changes in a phosphorus-removal activated sludge

(2010) Jeremy J. Barr et al.   FEMS MICROBIOLOGY ECOLOGY

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

‘Candidatus Accumulibacter’ gene expression in response to dynamic EBPR conditions

(2010) Shaomei He et al.   ISME Journal

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature

(2010) Vincent J Denef et al.   ISME Journal

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis

(2010) Anne Salonen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Transposases are the most abundant, most ubiquitous genes in nature

(2010) Ramy K. Aziz et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Sequencing of an In Vitro-Simulated Microbial Community

(2010) Jenna L. Morgan et al.   PLoS One

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Catalog of Reference Genomes from the Human Microbiome

(2010) et al.   SCIENCE

A phylum level perspective on bacterial cell envelope architecture

(2010) Iain C. Sutcliffe   TRENDS IN MICROBIOLOGY

Characterization of alginate-like exopolysaccharides isolated from aerobic granular sludge in pilot-plant

(2010) Yuemei Lin et al.   WATER RESEARCH

A conceptual ecosystem model of microbial communities in enhanced biological phosphorus removal plants

(2010) Per Halkjær Nielsen et al.   WATER RESEARCH

Comparative Metagenomic Analysis of a Microbial Community Residing at a Depth of 4,000 Meters at Station ALOHA in the North Pacific Subtropical Gyre

(2009) K. T. Konstantinidis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome assembly reborn: recent computational challenges

(2009) M. Pop   BRIEFINGS IN BIOINFORMATICS

Radiolabelled proteomics to determine differential functioning ofAccumulibacterduring the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal

(2009) Margaret Wexler et al.   ENVIRONMENTAL MICROBIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm

(2009) William J Brazelton et al.   ISME Journal

Denitrification capabilities of two biological phosphorus removal sludges dominated by different ‘CandidatusAccumulibacter’ clades

(2009) Jason J. Flowers et al.   Environmental Microbiology Reports

Identification and Ecophysiological Characterization of Epiphytic Protein-Hydrolyzing Saprospiraceae ("Candidatus Epiflobacter" spp.) in Activated Sludge

(2008) Y. Xia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular Diversity of a North Carolina Wastewater Treatment Plant as Revealed by Pyrosequencing

(2008) N. Sanapareddy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

(2008) H. Noguchi et al.   DNA RESEARCH

Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal

(2008) S. Brook Peterson et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic patterns of recombination, clonal divergence and environment in marine microbial populations

(2008) Konstantinos T Konstantinidis et al.   ISME Journal

A Bioinformatician's Guide to Metagenomics

(2008) V. Kunin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

A bacterial metapopulation adapts locally to phage predation despite global dispersal

(2007) V. Kunin et al.   GENOME RESEARCH