Alternative splicing and gene expression play contrasting roles in the parallel phenotypic evolution of a salmonid fish

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Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish

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Cis-regulatory differences in isoform expression associate with life history strategy variation in Atlantic salmon

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Patterns of alternative splicing in response to cold acclimation in fish

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Comparative transcriptomics of social insect queen pheromones

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Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex

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Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids

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Do differences in the activities of carbohydrate metabolism enzymes between Lake Whitefish ecotypes match predictions from transcriptomic studies?

(2018) Anne C. Dalziel et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

On the challenges and opportunities facing fish biology: a discussion of five key knowledge gaps

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Extensive Differential Splicing Underlies Phenotypically Plastic Aphid Morphs

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Genetics of alternative splicing evolution during sunflower domestication

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The Evolution of Gene Expression in cis and trans

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Mechanism of Nonsense-Mediated mRNA Decay Stimulation by Splicing Factor SRSF1

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Differential gene expression during early development in recently evolved and sympatric Arctic charr morphs

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Gene regulation underlies environmental adaptation in house mice

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The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly

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Genome-Wide Regulatory Adaptation Shapes Population-Level Genomic Landscapes in Heliconius

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Heterologous Hsp90 promotes phenotypic diversity through network evolution

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Rapid niche expansion by selection on functional genomic variation after ecosystem recovery

(2018) Arne Jacobs et al.   Nature Ecology & Evolution

The Role of Alternative Splicing and Differential Gene Expression in Cichlid Adaptive Radiation

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Co-expression networks reveal the tissue-specific regulation of transcription and splicing

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Annotation-free quantification of RNA splicing using LeafCutter

(2017) Yang I. Li et al.   NATURE GENETICS

Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard

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The Evolutionary Relationship between Alternative Splicing and Gene Duplication

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Genomic tools for new insights to variation, adaptation, and evolution in the salmonid fishes: a perspective for charr

(2016) Kathryn R. Elmer   HYDROBIOLOGIA

Expression Divergence Is Correlated with Sequence Evolution but Not Positive Selection in Conifers

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The role of isoforms in the evolution of cryptic coloration inPeromyscusmice

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The Atlantic salmon genome provides insights into rediploidization

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Alternative splicing and the evolution of phenotypic novelty

(2016) Stephen J. Bush et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

RNA splicing is a primary link between genetic variation and disease

(2016) Yang I. Li et al.   SCIENCE

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(2015) Sam Yeaman   AMERICAN NATURALIST

Mechanisms and Regulation of Alternative Pre-mRNA Splicing

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Plastic and Evolutionary Gene Expression Responses Are Correlated in European Grayling (Thymallus thymallus) Subpopulations Adapted to Different Thermal Environments

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Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

(2015) Mariano Alvarez et al.   MOLECULAR ECOLOGY

Predominant contribution of cis-regulatory divergence in the evolution of mouse alternative splicing

(2015) Q. Gao et al.   Molecular Systems Biology

Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions

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Gene Coexpression Networks Reveal Key Drivers of Phenotypic Divergence in Lake Whitefish

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Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data

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Convergent evolutionary processes driven by foraging opportunity in two sympatric morph pairs of Arctic charr with contrasting post-glacial origins

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Oxidative phosphorylation gene transcription in whitefish species pairs reveals patterns of parallel and nonparallel physiological divergence

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Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua

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Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues

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The Evolutionary Landscape of Alternative Splicing in Vertebrate Species

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Genome-wide analysis of alternative splicing evolution amongMussubspecies

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Expansion of the eukaryotic proteome by alternative splicing

(2010) Timothy W. Nilsen et al.   NATURE

Alternative splicing and evolution: diversification, exon definition and function

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Regulatory changes underlying expression differences within and between Drosophila species

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