Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids
出版年份 2019 全文链接
标题
Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids
作者
关键词
-
出版物
BMC GENOMICS
Volume 20, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-12-23
DOI
10.1186/s12864-019-6361-2
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Speciation in protists: Spatial and ecological divergence processes cause rapid species diversification in a freshwater chrysophyte
- (2019) Pavel Škaloud et al. MOLECULAR ECOLOGY
- Parallel signatures of selection at genomic islands of divergence and the MHC in ecotypes of sockeye salmon across Alaska
- (2019) Wesley A. Larson et al. MOLECULAR ECOLOGY
- A Single Interacting Species Leads to Widespread Parallel Evolution of the Stickleback Genome
- (2019) Sara E. Miller et al. CURRENT BIOLOGY
- Integrated transcriptome provides resources and insights into the adaptive evolution of colonized brown trout ( Salmo trutta fario) in the Tibetan Plateau
- (2019) Xiaowen Chen et al. JOURNAL OF THE WORLD AQUACULTURE SOCIETY
- WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
- (2019) Yuxing Liao et al. NUCLEIC ACIDS RESEARCH
- Signatures of Relaxed Selection in the CYP8B1 Gene of Birds and Mammals
- (2019) Sagar Sharad Shinde et al. JOURNAL OF MOLECULAR EVOLUTION
- Evolutionary expression differences of creatine synthesis-related genes: Implications for skeletal muscle metabolism in fish
- (2019) Andreas Borchel et al. Scientific Reports
- Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation
- (2019) Anja Striberny et al. BMC GENOMICS
- Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex
- (2019) Clément Rougeux et al. MOLECULAR ECOLOGY
- De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species
- (2018) Madeleine Carruthers et al. BMC GENOMICS
- Convergent selection pressures drive the evolution of rhodopsin kinetics at high altitudes via nonparallel mechanisms
- (2018) Gianni M. Castiglione et al. EVOLUTION
- Human long intrinsically disordered protein regions are frequent targets of positive selection
- (2018) Arina Afanasyeva et al. GENOME RESEARCH
- Life-stage-associated remodelling of lipid metabolism regulation in Atlantic salmon
- (2018) Gareth Gillard et al. MOLECULAR ECOLOGY
- Inferring phylogenetic structure, hybridization and divergence times within Salmoninae (Teleostei: Salmonidae) using RAD-sequencing
- (2018) Laurène A. Lecaudey et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Subfunctionalization versus neofunctionalization after whole-genome duplication
- (2018) Simen R. Sandve et al. NATURE GENETICS
- A genomics approach reveals insights into the importance of gene losses for mammalian adaptations
- (2018) Virag Sharma et al. Nature Communications
- The grayling genome reveals selection on gene expression regulation after whole genome duplication
- (2018) Srinidhi Varadharajan et al. Genome Biology and Evolution
- Rapid buildup of sympatric species diversity in Alpine whitefish
- (2018) Carmela J. Doenz et al. Ecology and Evolution
- Gene expression in the phenotypically plastic Arctic charr (Salvelinus alpinus ): A focus on growth and ossification at early stages of development
- (2018) Samantha V. Beck et al. EVOLUTION & DEVELOPMENT
- Rapid niche expansion by selection on functional genomic variation after ecosystem recovery
- (2018) Arne Jacobs et al. Nature Ecology & Evolution
- Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates
- (2017) Julien Roux et al. MOLECULAR BIOLOGY AND EVOLUTION
- Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife
- (2017) Jonathan P. Velotta et al. MOLECULAR ECOLOGY
- Investigating the extent of parallelism in morphological and genomic divergence among lake trout ecotypes in Lake Superior
- (2017) Alysse Perreault-Payette et al. MOLECULAR ECOLOGY
- Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char
- (2017) Jean-Sébastien Moore et al. MOLECULAR ECOLOGY
- WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit
- (2017) Jing Wang et al. NUCLEIC ACIDS RESEARCH
- Experimental evidence that parasites drive eco-evolutionary feedbacks
- (2017) Franziska S. Brunner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Information for Members and Subscribers - Subscriptions
- (2017) SYSTEMATIC BIOLOGY
- Ecosystem size predicts eco-morphological variability in a postglacial diversification
- (2017) Hans Recknagel et al. Ecology and Evolution
- Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes
- (2017) T. Fatima Mitterboeck et al. GigaScience
- Speciation, Ecological Opportunity, and Latitude
- (2016) Dolph Schluter AMERICAN NATURALIST
- Ecological Opportunity and Adaptive Radiation
- (2016) James T. Stroud et al. Annual Review of Ecology Evolution and Systematics
- Adaptation and acclimation of traits associated with swimming capacity in Lake Whitefish (coregonus clupeaformis) ecotypes
- (2016) Martin Laporte et al. BMC EVOLUTIONARY BIOLOGY
- Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database
- (2016) Jeremy Pasquier et al. BMC GENOMICS
- Common genetic heterogeneity of human interleukin-37 leads to functional variance
- (2016) Jingjing Yan et al. Cellular & Molecular Immunology
- Managing cryptic biodiversity: Fine-scale intralacustrine speciation along a benthic gradient in Alpine whitefish (Coregonusspp.)
- (2016) Alan G. Hudson et al. Evolutionary Applications
- Relaxed selective constraints drove functional modifications in peripheral photoreception of the cavefish P. andruzzii and provide insight into the time of cave colonization
- (2016) L Calderoni et al. HEREDITY
- Morphological, ecological and behavioural differentiation of sympatric profundal and pelagic Arctic charr (Salvelinus alpinus) in Loch Dughaill Scotland
- (2016) O. E. Hooker et al. HYDROBIOLOGIA
- Divergence and parallelism of parasite infections in Arctic charr morphs from deep and shallow lake habitats
- (2016) Anna Siwertsson et al. HYDROBIOLOGIA
- Genomic tools for new insights to variation, adaptation, and evolution in the salmonid fishes: a perspective for charr
- (2016) Kathryn R. Elmer HYDROBIOLOGIA
- Greater diversification of freshwater than marine parasites of fish
- (2016) Robert Poulin INTERNATIONAL JOURNAL FOR PARASITOLOGY
- Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals
- (2016) Maria Chikina et al. MOLECULAR BIOLOGY AND EVOLUTION
- Investigating genomic and phenotypic parallelism between piscivorous and planktivorous lake trout (Salvelinus namaycush) ecotypes by means of RADseq and morphometrics analyses
- (2016) S. Bernatchez et al. MOLECULAR ECOLOGY
- Adaptive genomic divergence under high gene flow between freshwater and brackish-water ecotypes of prickly sculpin (Cottus asper) revealed by Pool-Seq
- (2016) Stefan Dennenmoser et al. MOLECULAR ECOLOGY
- The Atlantic salmon genome provides insights into rediploidization
- (2016) Sigbjørn Lien et al. NATURE
- Continental cichlid radiations: functional diversity reveals the role of changing ecological opportunity in the Neotropics
- (2016) Jessica Hilary Arbour et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- An adult osteopetrosis model in medaka reveals the importance of osteoclast function for bone remodeling in teleost fish
- (2015) Thuy Thanh To et al. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY
- If Arctic charrSalvelinus alpinusis ‘the most diverse vertebrate’, what is the lake charrSalvelinus namaycush?
- (2015) Andrew Michael Muir et al. FISH AND FISHERIES
- Ecological and Lineage-Specific Factors Drive the Molecular Evolution of Rhodopsin in Cichlid Fishes
- (2015) Julián Torres-Dowdall et al. MOLECULAR BIOLOGY AND EVOLUTION
- Gene-Wide Identification of Episodic Selection
- (2015) Ben Murrell et al. MOLECULAR BIOLOGY AND EVOLUTION
- Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
- (2015) Martin D. Smith et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Effect of Selection Environment on the Probability of Parallel Evolution
- (2015) Susan F. Bailey et al. MOLECULAR BIOLOGY AND EVOLUTION
- FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.
- (2015) Vincent Lefort et al. MOLECULAR BIOLOGY AND EVOLUTION
- Comparative genomics in the Asteraceae reveals little evidence for parallel evolutionary change in invasive taxa
- (2015) Kathryn A. Hodgins et al. MOLECULAR ECOLOGY
- Convergent evolution of the genomes of marine mammals
- (2015) Andrew D Foote et al. NATURE GENETICS
- Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)
- (2015) Sangeet Lamichhaney et al. NATURE GENETICS
- Actin Disorganization Plays a Vital Role in Impaired Embryonic Development of In Vitro-Produced Mouse Preimplantation Embryos
- (2015) Kun Tan et al. PLoS One
- The genomics of organismal diversification illuminated by adaptive radiations
- (2015) Daniel Berner et al. TRENDS IN GENETICS
- Evolutionary Constraint and Disease Associations of Post-Translational Modification Sites in Human Genomes
- (2015) Jüri Reimand et al. PLoS Genetics
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Polymorphism in lake trout in Great Bear Lake: intra-lake morphological diversification at two spatial scales
- (2014) Louise Chavarie et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- CRATER LAKE HABITAT PREDICTS MORPHOLOGICAL DIVERSITY IN ADAPTIVE RADIATIONS OF CICHLID FISHES
- (2014) Hans Recknagel et al. EVOLUTION
- Big fish, little divergence: phylogeography of Lake Tanganyika’s giant cichlid, Boulengerochromis microlepis
- (2014) Stephan Koblmüller et al. HYDROBIOLOGIA
- Sequencing and characterization of the anadromous steelhead (Oncorhynchus mykiss) transcriptome
- (2014) Samuel E. Fox et al. Marine Genomics
- Selective Constraint Dominates the Evolution of Genes Expressed in a Novel Reproductive Gland
- (2014) Findley R. Finseth et al. MOLECULAR BIOLOGY AND EVOLUTION
- Patterns of Positive Selection in Seven Ant Genomes
- (2014) Julien Roux et al. MOLECULAR BIOLOGY AND EVOLUTION
- RELAX: Detecting Relaxed Selection in a Phylogenetic Framework
- (2014) Joel O. Wertheim et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar)
- (2014) Susan E. Johnston et al. MOLECULAR ECOLOGY
- The genomic substrate for adaptive radiation in African cichlid fish
- (2014) David Brawand et al. NATURE
- Differential expression of synapsin genes during early zebrafish development
- (2014) G. Garbarino et al. NEUROSCIENCE
- Relaxed selection causes microevolution of seawater osmoregulation and gene expression in landlocked Alewives
- (2014) Jonathan P. Velotta et al. OECOLOGIA
- The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei
- (2014) Eric B. Rondeau et al. PLoS One
- Convergent evolution in European and Rroma populations reveals pressure exerted by plague on Toll-like receptors
- (2014) H. Laayouni et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification
- (2014) D. J. Macqueen et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Differentiation of Sympatric Arctic Char Morphotypes Using Major Histocompatibility Class II Genes
- (2014) Pablo Conejeros et al. TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY
- Ecological opportunity and the adaptive diversification of lineages
- (2014) Gary A. Wellborn et al. Ecology and Evolution
- Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr
- (2014) Ehsan Ahi et al. EvoDevo
- Creatine metabolism differs between mammals and rainbow trout (Oncorhynchus mykiss)
- (2014) Andreas Borchel et al. SpringerPlus
- The evolutionary ecology of alternative migratory tactics in salmonid fishes
- (2013) Julian J. Dodson et al. BIOLOGICAL REVIEWS
- Gene Coexpression Networks Reveal Key Drivers of Phenotypic Divergence in Lake Whitefish
- (2013) Marie Filteau et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis
- (2013) Maha R Farhat et al. NATURE GENETICS
- WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013
- (2013) Jing Wang et al. NUCLEIC ACIDS RESEARCH
- Differentiation at the MHCIIα and Cath2 Loci in Sympatric Salvelinus alpinus Resource Morphs in Lake Thingvallavatn
- (2013) Kalina H. Kapralova et al. PLoS One
- ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R
- (2012) Andrei-Alin Popescu et al. BIOINFORMATICS
- Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach
- (2012) Matthieu Bruneaux et al. MOLECULAR ECOLOGY
- Ecological opportunity and sexual selection together predict adaptive radiation
- (2012) Catherine E. Wagner et al. NATURE
- Framing the Salmonidae Family Phylogenetic Portrait: A More Complete Picture from Increased Taxon Sampling
- (2012) Alexis Crête-Lafrenière et al. PLoS One
- Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines
- (2012) J. A. Birchler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Community-wide convergent evolution in insect adaptation to toxic cardenolides by substitutions in the Na,K-ATPase
- (2012) S. Dobler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MHC polymorphism and disease resistance to vibrio anguillarum in 8 families of half-smooth tongue sole (Cynoglossus semilaevis)
- (2011) Min Du et al. BMC GENETICS
- Actin dynamics and turnover in cell motility
- (2011) Klemens Rottner et al. CURRENT OPINION IN CELL BIOLOGY
- The Epithelia-Specific Membrane Trafficking Factor AP-1B Controls Gut Immune Homeostasis in Mice
- (2011) Daisuke Takahashi et al. GASTROENTEROLOGY
- The Genetic Consequences of Spatially Varying Selection in the Panmictic American Eel ( Anguilla rostrata )
- (2011) Pierre-Alexandre Gagnaire et al. GENETICS
- High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes
- (2011) P. Markova-Raina et al. GENOME RESEARCH
- Genetics of local adaptation in salmonid fishes
- (2011) C R Primmer HEREDITY
- Positive Darwinian Selection Drives the Evolution of the Morphology-Related Gene, EPCAM, in Particularly Species-Rich Lineages of African Cichlid Fishes
- (2011) Shaohua Fan et al. JOURNAL OF MOLECULAR EVOLUTION
- The Effects of Alignment Error and Alignment Filtering on the Sitewise Detection of Positive Selection
- (2011) G. Jordan et al. MOLECULAR BIOLOGY AND EVOLUTION
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Relaxed selection is a precursor to the evolution of phenotypic plasticity
- (2011) B. G. Hunt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Adaptation in the age of ecological genomics: insights from parallelism and convergence
- (2011) Kathryn R. Elmer et al. TRENDS IN ECOLOGY & EVOLUTION
- Characterization of the AP-1 μ1A and μ1B adaptins in zebrafish (Danio rerio)
- (2010) Daniela Zizioli et al. DEVELOPMENTAL DYNAMICS
- Ecological opportunity and the origin of adaptive radiations
- (2010) J. B. YODER et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing
- (2010) JULIE JEUKENS et al. MOLECULAR ECOLOGY
- Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes
- (2010) K. R. ELMER et al. MOLECULAR ECOLOGY
- The evolution of gene duplications: classifying and distinguishing between models
- (2010) Hideki Innan et al. NATURE REVIEWS GENETICS
- On the origin of species: insights from the ecological genomics of lake whitefish
- (2010) L. Bernatchez et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Convergence in pigmentation at multiple levels: mutations, genes and function
- (2010) M. Manceau et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes
- (2009) Francesco Santini et al. BMC EVOLUTIONARY BIOLOGY
- Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: Conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)
- (2009) Ruth B Phillips et al. BMC GENETICS
- VARIABLE PROGRESS TOWARD ECOLOGICAL SPECIATION IN PARAPATRY: STICKLEBACK ACROSS EIGHT LAKE-STREAM TRANSITIONS
- (2009) Daniel Berner et al. EVOLUTION
- Pleistocene desiccation in East Africa bottlenecked but did not extirpate the adaptive radiation of Lake Victoria haplochromine cichlid fishes
- (2009) K. R. Elmer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genetics and ecological speciation
- (2009) D. Schluter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reliabilities of identifying positive selection by the branch-site and the site-prediction methods
- (2009) M. Nozawa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for an ancient adaptive episode of convergent molecular evolution
- (2009) T. A. Castoe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Semantic Similarity in Biomedical Ontologies
- (2009) Catia Pesquita et al. PLoS Computational Biology
- Database indexing for production MegaBLAST searches
- (2008) Aleksandr Morgulis et al. BIOINFORMATICS
- Early involvement of synapsin III in neural progenitor cell development in the adult hippocampus
- (2008) Hung-Teh Kao et al. JOURNAL OF COMPARATIVE NEUROLOGY
- Divergence along a steep ecological gradient in lake whitefish (Coregonussp.)
- (2008) P. VONLANTHEN et al. JOURNAL OF EVOLUTIONARY BIOLOGY
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