The completed genome sequence of the pathogenic ascomycete fungus Penicillium digitatum

Significance of 195 bp-enhancer of PdCYP51B in the acquisition of Penicillium digitatum DMI resistance and increase of fungal virulence

(2020) Marta de Ramón-Carbonell et al.   PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY

Genomic Sequencing of Phyllosticta citriasiana Provides Insight Into Its Conservation and Diversification With Two Closely Related Phyllosticta Species Associated With Citrus

(2020) Mingshuang Wang et al.   Frontiers in Microbiology

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

Penicillium digitatum infection mechanisms in citrus: What do we know so far?

(2019) Jonas Henrique Costa et al.   Fungal Biology

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Functional diversification of sterol regulatory element binding proteins following gene duplication in a fungal species

(2019) Ruoxin Ruan et al.   FUNGAL GENETICS AND BIOLOGY

The Myosin Motor Domain-Containing Chitin Synthases Are Involved in Cell Wall Integrity and Sensitivity to Antifungal Proteins in Penicillium digitatum

(2019) Mónica Gandía et al.   Frontiers in Microbiology

Cell-Wall-Degrading Enzymes Required for Virulence in the Host Selective Toxin-Producing Necrotroph Alternaria alternata of Citrus

(2019) Haijie Ma et al.   Frontiers in Microbiology

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation

(2018) Han Zhang et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

PdSlt2 Penicillium digitatum mitogen-activated-protein kinase controls sporulation and virulence during citrus fruit infection

(2017) Marta de Ramón-Carbonell et al.   Fungal Biology

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Functional characterization of the Dsc E3 ligase complex in the citrus postharvest pathogen Penicillium digitatum

(2017) Ruoxin Ruan et al.   MICROBIOLOGICAL RESEARCH

Involvement of Penicillium digitatum PdSUT1 in fungicide sensitivity and virulence during citrus fruit infection

(2017) Marta de Ramón-Carbonell et al.   MICROBIOLOGICAL RESEARCH

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of secondary metabolite biosynthetic gene clusters associated with the infection of citrus fruit by Penicillium digitatum

(2017) Congyi Zhu et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Functional analysis of two sterol regulatory element binding proteins in Penicillium digitatum

(2017) Ruoxin Ruan et al.   PLoS One

A novel major facilitator superfamily transporter in Penicillium digitatum (PdMFS2) is required for prochloraz resistance, conidiation and full virulence

(2016) Zhi Wu et al.   BIOTECHNOLOGY LETTERS

The citrus postharvest pathogen Penicillium digitatum depends on the PdMpkB kinase for developmental and virulence functions

(2016) Haijie Ma et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Relevance of the transcription factor PdSte12 in Penicillium digitatum conidiation and virulence during citrus fruit infection

(2016) Laura Vilanova et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Adenylyl cyclase is required for cAMP production, growth, conidial germination, and virulence in the citrus green mold pathogen Penicillium digitatum

(2016) Weili Wang et al.   MICROBIOLOGICAL RESEARCH

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens:Penicillium digitatumandPenicillium expansum

(2015) Irene Julca et al.   Genome Biology and Evolution

ThePenicillium digitatumproteinO-mannosyltransferase Pmt2 is required for cell wall integrity, conidiogenesis, virulence and sensitivity to the antifungal peptide PAF26

(2015) Eleonora Harries et al.   MOLECULAR PLANT PATHOLOGY

PdbrlA, PdabaA and PdwetA control distinct stages of conidiogenesis in Penicillium digitatum

(2015) Mingshuang Wang et al.   RESEARCH IN MICROBIOLOGY

Deletion of PdMit1, a homolog of yeast Csg1, affects growth and Ca2+ sensitivity of the fungus Penicillium digitatum, but does not alter virulence

(2015) Congyi Zhu et al.   RESEARCH IN MICROBIOLOGY

Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi

(2014) Christian P. Kubicek et al.   Annual Review of Phytopathology

Glucosylceramides are required for mycelial growth and full virulence in Penicillium digitatum

(2014) Congyi Zhu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The myosin motor domain-containing chitin synthase PdChsVII is required for development, cell wall integrity and virulence in the citrus postharvest pathogen Penicillium digitatum

(2014) Mónica Gandía et al.   FUNGAL GENETICS AND BIOLOGY

Sequencing, physical organization and kinetic expression of the patulin biosynthetic gene cluster from Penicillium expansum

(2014) Joanna Tannous et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Novel mutations in CYP51B from Penicillium digitatum involved in prochloraz resistance

(2014) Jinlong Wang et al.   JOURNAL OF MICROBIOLOGY

Identification and nomenclature of the genus Penicillium

(2014) C.M. Visagie et al.   STUDIES IN MYCOLOGY

PdSNF1, a sucrose non-fermenting protein kinase gene, is required for Penicillium digitatum conidiation and virulence

(2013) Tianyuan Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The pH signaling transcription factor PacC is required for full virulence in Penicillium digitatum

(2013) Tianyuan Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genomewide investigation into DNA elements and ABC transporters involved in imazalil resistance inPenicillium digitatum

(2013) Xuepeng Sun et al.   FEMS MICROBIOLOGY LETTERS

Os2 MAP kinase-mediated osmostress tolerance in Penicillium digitatum is associated with its positive regulation on glycerol synthesis and negative regulation on ergosterol synthesis

(2013) Mingshuang Wang et al.   MICROBIOLOGICAL RESEARCH

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

(2012) Marina Marcet-Houben et al.   BMC GENOMICS

The calcineurin-responsive transcription factor Crz1 is required for conidation, full virulence and DMI resistance in Penicillium digitatum

(2012) Tianyuan Zhang et al.   MICROBIOLOGICAL RESEARCH

dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more

(2012) Hai Fang et al.   NUCLEIC ACIDS RESEARCH

PdMLE1, a specific and active transposon acts as a promoter and confersPenicillium digitatumwith DMI resistance

(2012) Xuepeng Sun et al.   Environmental Microbiology Reports

PdCYP51B, a new putative sterol 14α-demethylase gene of Penicillium digitatum involved in resistance to imazalil and other fungicides inhibiting ergosterol synthesis

(2011) Xuepeng Sun et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

PredGPI: a GPI-anchor predictor

(2008) Andrea Pierleoni et al.   BMC BIOINFORMATICS