Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens:Penicillium digitatumandPenicillium expansum

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

(2015) Henry Heberle et al.   BMC BIOINFORMATICS

Characterizing the proteome and oxi-proteome of apple in response to a host (Penicillium expansum) and a non-host (Penicillium digitatum) pathogen

(2015) Gemma Buron-Moles et al.   Journal of Proteomics

AMAT1-2wild-type strain fromPenicillium chrysogenum: functional mating-type locus characterization, genome sequencing and mating with an industrial penicillin-producing strain

(2015) Julia Böhm et al.   MOLECULAR MICROBIOLOGY

Genomic Characterization Reveals Insights Into Patulin Biosynthesis and Pathogenicity in Penicillium Species

(2015) Boqiang Li et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Clonal reproduction in fungi

(2015) John W. Taylor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombination detection inAspergillus fumigatusthrough single nucleotide polymorphisms typing

(2015) Joana Teixeira et al.   Environmental Microbiology Reports

Comparative Genomics Suggests Primary Homothallism of Pneumocystis Species

(2015) João M. G. C. F. Almeida et al.   mBio

Genome sequencing and analysis of the paclitaxel-producing endophytic fungus Penicillium aurantiogriseum NRRL 62431

(2014) Yanfang Yang et al.   BMC GENOMICS

Genomic characteristics and comparative genomics analysis of Penicillium chrysogenum KF-25

(2014) Qin Peng et al.   BMC GENOMICS

Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum

(2014) Fu-Qiang Wang et al.   BMC GENOMICS

Genomic analysis of the aconidial and high-performance protein producer, industrially relevant Aspergillus niger SH2 strain

(2014) Chao Yin et al.   GENE

Genomewide investigation into DNA elements and ABC transporters involved in imazalil resistance inPenicillium digitatum

(2013) Xuepeng Sun et al.   FEMS MICROBIOLOGY LETTERS

The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

(2013) Henrik Nordberg et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus

(2012) Marina Marcet-Houben et al.   BMC GENOMICS

The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

(2012) John G. Gibbons et al.   CURRENT BIOLOGY

Comparative Genome Analysis Between Aspergillus oryzae Strains Reveals Close Relationship Between Sites of Mutation Localization and Regions of Highly Divergent Genes among Aspergillus Species

(2012) M. Umemura et al.   DNA RESEARCH

Sex, outcrossing and mating types: unsolved questions in fungi and beyond

(2012) S. BILLIARD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Sex in Cheese: Evidence for Sexuality in the Fungus Penicillium roqueforti

(2012) Jeanne Ropars et al.   PLoS One

Boron improves the biocontrol activity of Cryptococcus laurentii against Penicillium expansum in jujube fruit

(2012) Baohua Cao et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

Sex in Fungi

(2011) Min Ni et al.   Annual Review of Genetics

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

(2011) M. R. Andersen et al.   GENOME RESEARCH

Combination of salicylic acid and ultrasound to control postharvest blue mold caused by Penicillium expansum in peach fruit

(2011) Zhenfeng Yang et al.   Innovative Food Science & Emerging Technologies

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Validation of a predictive model for the growth of Botrytis cinerea and Penicillium expansum on grape berries

(2010) Daniela Judet-Correia et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions

(2010) J. Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

The NCBI BioSystems database

(2009) Lewis Y. Geer et al.   NUCLEIC ACIDS RESEARCH

Evolutionary Biology: Genomic Clues to Original Sex in Fungi

(2008) Paul S. Dyer   CURRENT BIOLOGY

Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus

(2008) Bruce W. Horn et al.   FUNGAL GENETICS AND BIOLOGY

Proportionally more deleterious genetic variation in European than in African populations

(2008) Kirk E. Lohmueller et al.   NATURE

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics