A chicken DNA methylation clock for the prediction of broiler health

DNA Methylation Biomarkers in Aging and Age-Related Diseases

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Drivers of meat consumption

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The PedBE clock accurately estimates DNA methylation age in pediatric buccal cells

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DNA methylation-based biomarkers and the epigenetic clock theory of ageing

(2018) Steve Horvath et al.   NATURE REVIEWS GENETICS

Metabolic and inflammatory biomarkers are associated with epigenetic aging acceleration estimates in the GOLDN study

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Harnessing genomic information for livestock improvement

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The methylome of the marbled crayfish links gene body methylation to stable expression of poorly accessible genes

(2018) Fanny Gatzmann et al.   Epigenetics & Chromatin

The DNA methyltransferase family: a versatile toolkit for epigenetic regulation

(2017) Frank Lyko   NATURE REVIEWS GENETICS

Changes in immune and metabolic gut response in broilers fed β-mannanase in β-mannan-containing diets

(2017) R J Arsenault et al.   POULTRY SCIENCE

Impact of cytosine methylation on DNA binding specificities of human transcription factors

(2017) Yimeng Yin et al.   SCIENCE

Genome-wide DNA methylation profiles reveal novel candidate genes associated with meat quality at different age stages in hens

(2017) Meng Zhang et al.   Scientific Reports

Whole genome DNA methylation sequencing of the chicken retina, cornea and brain

(2017) Isac Lee et al.   Scientific Data

Poultry management: a useful tool for the control of necrotic enteritis in poultry

(2016) Vasilios Tsiouris   AVIAN PATHOLOGY

Livestock and the Environment: What Have We Learned in the Past Decade?

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Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq

(2015) Jinxiu Li et al.   BMC GENOMICS

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

Function and information content of DNA methylation

(2015) Dirk Schübeler   NATURE

Epigenetic regulation of ageing: linking environmental inputs to genomic stability

(2015) Bérénice A. Benayoun et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Genome-wide Mapping Reveals Conservation of Promoter DNA Methylation Following Chicken Domestication

(2015) Qinghe Li et al.   Scientific Reports

DNA methylation age of blood predicts all-cause mortality in later life

(2015) Riccardo E Marioni et al.   GENOME BIOLOGY

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

STRING v10: protein–protein interaction networks, integrated over the tree of life

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DNMT gene expression and methylome in Marek’s disease resistant and susceptible chickens prior to and following infection by MDV

(2013) Fei Tian et al.   Epigenetics

DNA methylation dynamics in health and disease

(2013) Yehudit Bergman et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Identification of active regulatory regions from DNA methylation data

(2013) Lukas Burger et al.   NUCLEIC ACIDS RESEARCH

Comparison of the Genome-Wide DNA Methylation Profiles between Fast-Growing and Slow-Growing Broilers

(2013) Yongsheng Hu et al.   PLoS One

PIIKA 2: An Expanded, Web-Based Platform for Analysis of Kinome Microarray Data

(2013) Brett Trost et al.   PLoS One

Identical sets of methylated and nonmethylated genes in Ciona intestinalis sperm and muscle cells

(2013) Miho M Suzuki et al.   Epigenetics & Chromatin

Evolution of the Modern Broiler and Feed Efficiency

(2013) Paul B. Siegel   Annual Review of Animal Biosciences

DNA methylation age of human tissues and cell types

(2013) Steve Horvath   GENOME BIOLOGY

Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates

(2012) Gregory Hannum et al.   MOLECULAR CELL

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates

(2011) Antoine Molaro et al.   CELL

DNA-binding factors shape the mouse methylome at distal regulatory regions

(2011) Michael B. Stadler et al.   NATURE

Genome-Wide Mapping of DNA Methylation in Chicken

(2011) Qinghe Li et al.   PLoS One

An Economic Analysis of the Impact of Subclinical (Mild) Necrotic Enteritis in Broiler Chickens

(2010) James T. Skinner et al.   AVIAN DISEASES

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

BSMAP: whole genome bisulfite sequence MAPping program

(2009) Yuanxin Xi et al.   BMC BIOINFORMATICS

Genome to Kinome: Species-Specific Peptide Arrays for Kinome Analysis

(2009) S. Jalal et al.   Science Signaling