Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island
出版年份 2016 全文链接
标题
Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island
作者
关键词
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出版物
Frontiers in Microbiology
Volume 7, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2016-03-08
DOI
10.3389/fmicb.2016.00248
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- (2015) Carlos R. Osorio et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The opportunistic marine pathogenVibrio parahaemolyticusbecomes virulent by acquiring a plasmid that expresses a deadly toxin
- (2015) Chung-Te Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plasmid curing and the loss of grip – The 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae
- (2015) Oliver Frank et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Multi-copy venom genes hidden in de novo transcriptome assemblies, a cautionary tale with the snakelocks sea anemone Anemonia sulcata (Pennant, 1977)
- (2015) Jason Macrander et al. TOXICON
- RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
- (2015) Thomas Brettin et al. Scientific Reports
- Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp. nov.
- (2014) Elena P. Ivanova et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Genomes of Alteromonas australica, a world apart
- (2014) Mario López-Pérez et al. BMC GENOMICS
- A field guide to whole-genome sequencing, assembly and annotation
- (2014) Robert Ekblom et al. Evolutionary Applications
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- (2014) Yurong Wen et al. NUCLEIC ACIDS RESEARCH
- Plasmid Profile and Pulsed–Field Gel Electrophoresis Analysis of Salmonella enterica Isolates from Humans in Turkey
- (2014) Kerem Ozdemir et al. PLoS One
- Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean
- (2014) B. E. Pedler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microbial diversity and the lability of dissolved organic carbon
- (2014) C. E. Nelson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A comprehensive evaluation of assembly scaffolding tools
- (2014) Martin Hunt et al. GENOME BIOLOGY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- GAGE-B: an evaluation of genome assemblers for bacterial organisms
- (2013) Tanja Magoc et al. BIOINFORMATICS
- Efficient and accurate whole genome assembly and methylome profiling of E. coli
- (2013) Jason G Powers et al. BMC GENOMICS
- Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools
- (2013) Veljo Kisand et al. BMC GENOMICS
- Genomic Diversity of “Deep Ecotype” Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames
- (2013) Mario López-Pérez et al. Genome Biology and Evolution
- Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling
- (2013) Brett J Baker et al. ISME Journal
- Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa
- (2013) Abdul R Sheik et al. ISME Journal
- Evolutionary Analysis and Lateral Gene Transfer of Two-Component Regulatory Systems Associated with Heavy-Metal Tolerance in Bacteria
- (2013) Juan L. Bouzat et al. JOURNAL OF MOLECULAR EVOLUTION
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- BacMet: antibacterial biocide and metal resistance genes database
- (2013) Chandan Pal et al. NUCLEIC ACIDS RESEARCH
- Reducing assembly complexity of microbial genomes with single-molecule sequencing
- (2013) Sergey Koren et al. GENOME BIOLOGY
- REAPR: a universal tool for genome assembly evaluation
- (2013) Martin Hunt et al. GENOME BIOLOGY
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Patterns and architecture of genomic islands in marine bacteria
- (2012) Beatriz Fernández-Gómez et al. BMC GENOMICS
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- Polyclonality of Concurrent Natural Populations of Alteromonas macleodii
- (2012) Aitor Gonzaga et al. Genome Biology and Evolution
- High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
- (2012) Nicholas J. Loman et al. NATURE REVIEWS MICROBIOLOGY
- Genetic and Phenotypic Characterization of a Pseudomonas aeruginosa Population with High Frequency of Genomic Islands
- (2012) Rosario Morales-Espinosa et al. PLoS One
- Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
- (2012) Adam C. English et al. PLoS One
- Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph
- (2012) Mario López-Pérez et al. Scientific Reports
- Toward almost closed genomes with GapFiller
- (2012) Marten Boetzer et al. GENOME BIOLOGY
- Toxin-Antitoxin Systems in Bacteria and Archaea
- (2011) Yoshihiro Yamaguchi et al. Annual Review of Genetics
- Marine Viruses: Truth or Dare
- (2011) Mya Breitbart Annual Review of Marine Science
- [NiFe] Hydrogenase fromAlteromonas macleodiiwith Unusual Stability in the Presence of Oxygen and High Temperature
- (2011) Walter A. Vargas et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Mauve Assembly Metrics
- (2011) Aaron E. Darling et al. BIOINFORMATICS
- Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis
- (2011) Daniela Kalhoefer et al. BMC GENOMICS
- BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
- (2011) Nabil-Fareed Alikhan et al. BMC GENOMICS
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- (2011) Yanmei Shi et al. ENVIRONMENTAL MICROBIOLOGY
- Genetic analysis of the Alteromonas macleodii [NiFe]-hydrogenase
- (2011) Philip D. Weyman et al. FEMS MICROBIOLOGY LETTERS
- Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria
- (2011) Daniel Sher et al. ISME Journal
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- (2011) B. Klippel et al. JOURNAL OF BACTERIOLOGY
- Genomic island variability facilitates Prochlorococcus–virus coexistence
- (2011) Sarit Avrani et al. NATURE
- Evidence for several waves of global transmission in the seventh cholera pandemic
- (2011) Ankur Mutreja et al. NATURE
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- (2011) T. G. Platt et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
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- (2010) J. McCarren et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2009) Anna I. Rissman et al. BIOINFORMATICS
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- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Viruses manipulate the marine environment
- (2009) Forest Rohwer et al. NATURE
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Explaining microbial population genomics through phage predation
- (2009) Francisco Rodriguez-Valera et al. NATURE REVIEWS MICROBIOLOGY
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Insights learned from pBTAi1, a 229-kb accessory plasmid from Bradyrhizobium sp. strain BTAi1 and prevalence of accessory plasmids in other Bradyrhizobium sp. strains
- (2008) Eddie J Cytryn et al. ISME Journal
- Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
- (2008) Elena Ivars-Martinez et al. ISME Journal
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