Discovery and characterization of a fourth class of guanidine riboswitches

Riboswitch regulation mechanisms: RNA, metabolites and regulatory proteins

(2020) Anne-Sophie Vézina Bédard et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Discovery of 20 novel ribosomal leader candidates in bacteria and archaea

(2020) Iris Eckert et al.   BMC MICROBIOLOGY

Former orphan riboswitches reveal unexplored areas of bacterial metabolism, signaling, and gene control processes

(2020) Madeline E. Sherlock et al.   RNA

Database resources of the National Center for Biotechnology Information

(2019) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

Aptamers in RNA-based switches of gene expression

(2019) Maike Spöring et al.   CURRENT OPINION IN BIOTECHNOLOGY

Guanidinium export is the primal function of SMR family transporters

(2018) Ali A. Kermani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Guanidine-sensing riboswitches: How do they work and what do they regulate?

(2018) Robert A. Battaglia et al.   Wiley Interdisciplinary Reviews-RNA

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Metabolism of Free Guanidine in Bacteria Is Regulated by a Widespread Riboswitch Class

(2017) James W. Nelson et al.   MOLECULAR CELL

Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions

(2017) Zasha Weinberg et al.   NUCLEIC ACIDS RESEARCH

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

Structural basis for ligand binding to the guanidine-II riboswitch

(2017) Caroline W. Reiss et al.   RNA

Structural basis for guanidine sensing by theykkCfamily of riboswitches

(2017) Robert A. Battaglia et al.   RNA

Riboswitch diversity and distribution

(2017) Phillip J. McCown et al.   RNA

Riboswitch-Mediated Gene Regulation: Novel RNA Architectures Dictate Gene Expression Responses

(2016) Anna V. Sherwood et al.   Annual Review of Microbiology

Emerging applications of riboswitches – from antibacterial targets to molecular tools

(2016) Piotr Machtel et al.   JOURNAL OF APPLIED GENETICS

A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs

(2016) Elena Rivas et al.   NATURE METHODS

Therapeutic Applications of Aptamer-Based Riboswitches

(2016) Chang Ho Lee et al.   Nucleic Acid Therapeutics

Structural basis for diversity in the SAM clan of riboswitches

(2014) J. J. Trausch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

A Decade of Riboswitches

(2013) Alexander Serganov et al.   CELL

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

R2R - software to speed the depiction of aesthetic consensus RNA secondary structures

(2011) Zasha Weinberg et al.   BMC BIOINFORMATICS

RNIE: genome-wide prediction of bacterial intrinsic terminators

(2011) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Challenges of ligand identification for riboswitch candidates

(2011) Michelle M. Meyer et al.   RNA Biology

Widespread Genetic Switches and Toxicity Resistance Proteins for Fluoride

(2011) J. L. Baker et al.   SCIENCE

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

(2010) Zasha Weinberg et al.   GENOME BIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches

(2008) Z. Weinberg et al.   RNA