Deep microbial community profiling along the fermentation process of pulque, a biocultural resource of Mexico

Sphingomonas pokkalii sp. nov., a novel plant associated rhizobacterium isolated from a saline tolerant pokkali rice and its draft genome analysis

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The epiphytic microbiota of sour rot-affected grapes differs minimally from that of healthy grapes, indicating causal organisms are already present on healthy berries

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Metagenomic Microbial Diversity in Aguamiel from Two Agave Species During 4-Year Seasons

(2019) Sandra Luz Villarreal Morales et al.   FOOD BIOTECHNOLOGY

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

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Sequencing of the Cheese Microbiome and Its Relevance to Industry

(2018) Bhagya. R. Yeluri Jonnala et al.   Frontiers in Microbiology

Marchantia liverworts as a proxy to plants’ basal microbiomes

(2018) Luis D. Alcaraz et al.   Scientific Reports

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Genomic Analysis of Microbulbifer sp. Strain A4B-17 and the Characterization of Its Metabolic Pathways for 4-Hydroxybenzoic Acid Synthesis

(2018) Jun Tian et al.   Frontiers in Microbiology

Characterization of the fungal flora of dolo, a traditional fermented beverage of Burkina Faso, using MALDI-TOF mass spectrometry

(2017) Bamba Sanata et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Some Technological Properties of Lactic Acid Bacteria Isolated from Dahi and Datshi, Naturally Fermented Milk Products of Bhutan

(2017) H. N. J. Shangpliang et al.   Frontiers in Microbiology

Evaluationof the fermentative potential ofCandida zemplininayeasts for craft beer fermentation

(2016) W. D. Estela-Escalante et al.   JOURNAL OF THE INSTITUTE OF BREWING

Engineering a predatory bacterium as a proficient killer agent for intracellular bio-products recovery: The case of the polyhydroxyalkanoates

(2016) Virginia Martínez et al.   Scientific Reports

Pulque, a Traditional Mexican Alcoholic Fermented Beverage: Historical, Microbiological, and Technical Aspects

(2016) Adelfo Escalante et al.   Frontiers in Microbiology

Exploring the cockatiel (Nymphicus hollandicus) fecal microbiome, bacterial inhabitants of a worldwide pet

(2016) Luis David Alcaraz et al.   PeerJ

Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay

(2016) Benli Chai et al.   PLoS One

Aguamiel concentrate from Agave salmiana and its extracted saponins attenuated obesity and hepatic steatosis and increased Akkermansia muciniphila in C57BL6 mice

(2016) Ana María Leal-Díaz et al.   Scientific Reports

Identification of novel anti-inflammatory probiotic strains isolated from pulque

(2015) Edgar Torres-Maravilla et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses

(2015) Noppon Lertwattanasakul et al.   Biotechnology for Biofuels

Unpasteurised commercial boza as a source of microbial diversity

(2015) Andrea Osimani et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

The controversial nature of the Weissella genus: technological and functional aspects versus whole genome analysis-based pathogenic potential for their application in food and health

(2015) Hikmate Abriouel et al.   Frontiers in Microbiology

Indigenous Bacteria and Fungi Drive Traditional Kimoto Sake Fermentations

(2014) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of the microbial community in kefir grains

(2014) Ufuk Nalbantoglu et al.   FOOD MICROBIOLOGY

Genome-wide analysis of Sphingomonas wittichii RW1 behaviour during inoculation and growth in contaminated sand

(2014) Silvia K Moreno-Forero et al.   ISME Journal

Direct ethanol production from dextran industrial waste water by Zymomonas mobilis

(2014) Ming-xiong He et al.   KOREAN JOURNAL OF CHEMICAL ENGINEERING

Changes in Microbiota Population during Fermentation ofNarezushias Revealed by Pyrosequencing Analysis

(2012) Masashi KIYOHARA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Microbial community analysis of Korean soybean pastes by next-generation sequencing

(2012) Young-Do Nam et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Lactic acid bacteria diversity of African raw and fermented camel milk products reveals a highly competitive, potentially health-threatening predominant microflora

(2012) Christoph Jans et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

First Report of Penicillium carneum Causing Blue Mold on Stored Apples in Pennsylvania

(2012) K. A. Peter et al.   PLANT DISEASE

Subdivision of the genus Gluconacetobacter Yamada, Hoshino and Ishikawa 1998: the proposal of Komagatabacter gen. nov., for strains accommodated to the Gluconacetobacter xylinus group in the α-Proteobacteria

(2011) Yuzo Yamada et al.   ANNALS OF MICROBIOLOGY

Unexpected convergence of fungal and bacterial communities during fermentation of traditional Korean alcoholic beverages inoculated with various natural starters

(2011) Mi-Ja Jung et al.   FOOD MICROBIOLOGY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1

(2010) T. R. Miller et al.   JOURNAL OF BACTERIOLOGY

Pseudoclavibacter soli sp. nov., a  -glucosidase-producing bacterium

(2009) M. K. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing

(2009) Seong Woon Roh et al.   ISME Journal

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

The yeast Kluyveromyces marxianus and its biotechnological potential

(2008) Gustavo Graciano Fonseca et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Yeasts associated with the production of Mexican alcoholic nondistilled and distilledAgavebeverages

(2008) Patricia Lappe-Oliveras et al.   FEMS YEAST RESEARCH

Analysis of bacterial community during the fermentation of pulque, a traditional Mexican alcoholic beverage, using a polyphasic approach

(2008) A ESCALANTE et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY