Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures
出版年份 2015 全文链接
标题
Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures
作者
关键词
miRNA, <em class=EmphasisTypeItalic >Phaseolus vulgaris</em>, SSRs, Shannon entropy, MFEI
出版物
BMC PLANT BIOLOGY
Volume 15, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-06-12
DOI
10.1186/s12870-015-0516-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Identification of MicroRNAs and Target Genes in the Fruit and Shoot Tip of Lycium chinense: A Traditional Chinese Medicinal Plant
- (2015) A. B. M. Khaldun et al. PLoS One
- Systems and Evolutionary Characterization of MicroRNAs and Their Underlying Regulatory Networks in Soybean Cotyledons
- (2014) Wolfgang Goettel et al. PLoS One
- Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)
- (2013) Tapan Kumar Mondal et al. GENE
- Computational identification of microRNAs and their targets in apple
- (2013) Keyong Ye et al. Genes & Genomics
- Discovery of MicroRNA169 Gene Copies in Genomes of Flowering Plants through Positional Information
- (2013) Martín Calviño et al. Genome Biology and Evolution
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- De novo Transcriptome Sequencing Reveals a Considerable Bias in the Incidence of Simple Sequence Repeats towards the Downstream of ‘Pre-miRNAs’ of Black Pepper
- (2013) Nisha Joy et al. PLoS One
- The Hot Pepper (Capsicum annuum) MicroRNA Transcriptome Reveals Novel and Conserved Targets: A Foundation for Understanding MicroRNA Functional Roles in Hot Pepper
- (2013) Dong-Gyu Hwang et al. PLoS One
- Computational identification of conserved microRNAs and their putative targets in the Hypericum perforatum L. flower transcriptome
- (2013) Giulio Galla et al. Plant Reproduction
- Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
- (2012) Pablo Pelaez et al. BMC GENOMICS
- Identification of an miRNA candidate reflects the possible significance of transcribed microsatellites in the hairpin precursors of black pepper
- (2012) Nisha Joy et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Identification and characterization of microRNAs and their target genes in Brassica oleracea
- (2012) Jinyan Wang et al. GENE
- Computational Identification of MicroRNAs in Strawberry Expressed Sequence Tags and Validation of Their Precise Sequences by miR-RACE
- (2012) Qing-Hua Dong et al. JOURNAL OF HEREDITY
- Computational Identification of MicroRNAs and Their Targets in Cassava (Manihot esculenta Crantz.)
- (2012) Onsaya Patanun et al. MOLECULAR BIOTECHNOLOGY
- Identification and validation of potential conserved microRNAs and their targets in peach (Prunus persica)
- (2012) Zhihong Gao et al. MOLECULES AND CELLS
- Rfam 11.0: 10 years of RNA families
- (2012) Sarah W. Burge et al. NUCLEIC ACIDS RESEARCH
- NCBI GEO: archive for functional genomics data sets—update
- (2012) Tanya Barrett et al. NUCLEIC ACIDS RESEARCH
- Functions of microRNAs in plant stress responses
- (2012) Ramanjulu Sunkar et al. TRENDS IN PLANT SCIENCE
- Functional Specialization of the Plant miR396 Regulatory Network through Distinct MicroRNA–Target Interactions
- (2012) Juan M. Debernardi et al. PLoS Genetics
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
- (2011) Philippe Lamesch et al. NUCLEIC ACIDS RESEARCH
- A Parsimonious Model for Gene Regulation by miRNAs
- (2011) S. Djuranovic et al. SCIENCE
- Computational Analysis of Drought Stress-Associated miRNAs and miRNA Co-Regulation Network in Physcomitrella patens
- (2011) Ping Wan et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Computational Identification of Novel MicroRNAs and Their Targets inVigna unguiculata
- (2010) Yongzhong Lu et al. COMPARATIVE AND FUNCTIONAL GENOMICS
- Vegetative phase change is mediated by a leaf-derived signal that represses the transcription of miR156
- (2010) L. Yang et al. DEVELOPMENT
- MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis
- (2010) M. D. Nodine et al. GENES & DEVELOPMENT
- Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
- (2010) Liguo Zhou et al. JOURNAL OF EXPERIMENTAL BOTANY
- Comprehensive Analysis of Simple Sequence Repeats in Pre-miRNAs
- (2010) Ming Chen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome sequence of the palaeopolyploid soybean
- (2010) Jeremy Schmutz et al. NATURE
- MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity
- (2010) Oswaldo Valdés-López et al. NEW PHYTOLOGIST
- Computational identification of citrus microRNAs and target analysis in citrus expressed sequence tags
- (2010) C. Song et al. PLANT BIOLOGY
- Temporal Control of Trichome Distribution by MicroRNA156-Targeted SPL Genes in Arabidopsis thaliana
- (2010) N. Yu et al. PLANT CELL
- Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange
- (2010) Xiao-Meng Wu et al. PLANTA
- Genome-wide computational identification and manual annotation of human long noncoding RNA genes
- (2010) H. Jia et al. RNA
- Similar distribution of simple sequence repeats in diverse completedHuman Immunodeficiency Virus Type 1genomes
- (2009) Ming Chen et al. FEBS LETTERS
- MicroRNA biogenesis and function in higher plants
- (2009) Jae-Hoon Jung et al. Plant Biotechnology Reports
- Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
- (2009) Catalina Arenas-Huertero et al. PLANT MOLECULAR BIOLOGY
- miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula
- (2009) Inês Trindade et al. PLANTA
- Computational identification of microRNAs and their targets in wheat (Triticum aestivum L.)
- (2009) YouSheng Han et al. Science in China. Series C, Life sciences / Chinese Academy of Sciences
- Novel and nodulation-regulated microRNAs in soybean roots
- (2008) Senthil Subramanian et al. BMC GENOMICS
- Bioinformatic analysis of the CLE signaling peptide family
- (2008) Karsten Oelkers et al. BMC PLANT BIOLOGY
- MicroRNA-mediated Systemic Down-regulation of Copper Protein Expression in Response to Low Copper Availability inArabidopsis
- (2008) Salah E. Abdel-Ghany et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Analyzing real-time PCR data by the comparative CT method
- (2008) Thomas D Schmittgen et al. Nature Protocols
- Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots
- (2008) OSWALDO VALDÉS-LÓPEZ et al. PLANT CELL AND ENVIRONMENT
- Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
- (2008) H.-H. Liu et al. RNA
- Widespread Translational Inhibition by Plant miRNAs and siRNAs
- (2008) P. Brodersen et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started