Transcriptional flexibility during thermal challenge corresponds with expanded thermal tolerance in an invasive compared to native fish

Transcriptomic plasticity of mesophotic corals among natural populations and transplants of Montastraea cavernosa in the Gulf of Mexico and Belize

(2020) Michael S. Studivan et al.   MOLECULAR ECOLOGY

Adaptation of plasticity to projected maximum temperatures and across climatically defined bioregions

(2020) Jonathan Sandoval-Castillo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Beyond propagule pressure: importance of selection during the transport stage of biological invasions

(2018) Elizabeta Briski et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

The utility of transcriptomics in fish conservation

(2018) Richard E. Connon et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptomic responses to extreme low salinity among locally adapted populations of Olympia oyster (Ostrea lurida )

(2018) Ashley Maynard et al.   MOLECULAR ECOLOGY

Plasticity in gene transcription explains the differential performance of two invasive fish species

(2017) Kyle W. Wellband et al.   Evolutionary Applications

The adaptive potential of subtropical rainbowfish in the face of climate change: heritability and heritable plasticity for the expression of candidate genes

(2016) R. J. Scott McCairns et al.   Evolutionary Applications

Trophic sensitivity of invasive predator and native prey interactions: integrating environmental context and climate change

(2016) Brian S. Cheng et al.   FUNCTIONAL ECOLOGY

Ecological and methodological drivers of species’ distribution and phenology responses to climate change

(2016) Christopher J. Brown et al.   GLOBAL CHANGE BIOLOGY

Effects of high temperatures on threatened estuarine fishes during periods of extreme drought

(2016) Ken M. Jeffries et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

How plasticity, genetic assimilation and cryptic genetic variation may contribute to adaptive radiations

(2016) Ralf F. Schneider et al.   MOLECULAR ECOLOGY

Heritable variation in heat shock gene expression: a potential mechanism for adaptation to thermal stress in embryos of sea turtles

(2016) J. N. Tedeschi et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Examination of Predation on Early Life Stage Delta Smelt in the San Francisco Estuary Using DNA Diet Analysis

(2016) Brian M. Schreier et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Evaluating ‘Plasticity-First’ Evolution in Nature: Key Criteria and Empirical Approaches

(2016) Nicholas A. Levis et al.   TRENDS IN ECOLOGY & EVOLUTION

Coupled Downscaled Climate Models and Ecophysiological Metrics Forecast Habitat Compression for an Endangered Estuarine Fish

(2016) Larry R. Brown et al.   PLoS One

Transcriptomic response to heat stress among ecologically divergent populations of redband trout

(2015) Shawn R Narum et al.   BMC GENOMICS

Chronic exposures to low and high concentrations of ibuprofen elicit different gene response patterns in a euryhaline fish

(2015) Ken M. Jeffries et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Differential Expression of Genes that Control Respiration Contribute to Thermal Adaptation in Redband Trout ( Oncorhynchus mykiss gairdneri )

(2015) Michael R. Garvin et al.   Genome Biology and Evolution

Considerations for the use of transcriptomics in identifying the 'genes that matter' for environmental adaptation

(2015) T. G. Evans   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptomic responses to environmental temperature in eurythermal and stenothermal fishes

(2015) C. A. Logan et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Reciprocal osmotic challenges reveal mechanisms of divergence in phenotypic plasticity in the killifish Fundulus heteroclitus

(2015) R. S. Brennan et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Key Questions on the Role of Phenotypic Plasticity in Eco-Evolutionary Dynamics

(2015) Andrew P. Hendry   JOURNAL OF HEREDITY

Plastic and Evolved Responses to Global Change: What Can We Learn from Comparative Transcriptomics?: Table 1.

(2015) Melissa B. DeBiasse et al.   JOURNAL OF HEREDITY

Evolution of phenotypic plasticity in colonizing species

(2015) Russell Lande   MOLECULAR ECOLOGY

Linking transcriptional responses to organismal tolerance reveals mechanisms of thermal sensitivity in a mesothermal endangered fish

(2015) Lisa M. Komoroske et al.   MOLECULAR ECOLOGY

Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

(2015) Mariano Alvarez et al.   MOLECULAR ECOLOGY

RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snailChlorostoma funebralis

(2015) Lani U. Gleason et al.   MOLECULAR ECOLOGY

Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature

(2015) Cameron K. Ghalambor et al.   NATURE

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback

(2014) Matthew R. J. Morris et al.   MOLECULAR ECOLOGY

Ontogeny influences sensitivity to climate change stressors in an endangered fish

(2014) L. M. Komoroske et al.   Conservation Physiology

The role thermal physiology plays in species invasion

(2014) A. L. Kelley   Conservation Physiology

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Aquaculture Methods for a Genetically Managed Population of Endangered Delta Smelt

(2013) Joan C. Lindberg et al.   NORTH AMERICAN JOURNAL OF AQUACULTURE

Decadal Changes in the World's Coastal Latitudinal Temperature Gradients

(2013) Hannes Baumann et al.   PLoS One

From ‘Omics to Otoliths: Responses of an Estuarine Fish to Endocrine Disrupting Compounds across Biological Scales

(2013) Susanne M. Brander et al.   PLoS One

Extreme climatic event drives range contraction of a habitat-forming species

(2013) D. A. Smale et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Geographical range, heat tolerance and invasion success in aquatic species

(2013) A. E. Bates et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing

(2012) José A Robles et al.   BMC GENOMICS

Poised to prosper? A cross-system comparison of climate change effects on native and non-native species performance

(2012) Cascade J. B. Sorte et al.   ECOLOGY LETTERS

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

Evaluating the Performance of Captive Breeding Techniques for Conservation Hatcheries: A Case Study of the Delta Smelt Captive Breeding Program

(2012) Kathleen M. Fisch et al.   JOURNAL OF HEREDITY

Evolutionary and plastic rescue in multitrophic model communities

(2012) C. Kovach-Orr et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Detection of Threatened Delta Smelt in the Gut Contents of the Invasive Mississippi Silverside in the San Francisco Estuary Using TaqMan Assays

(2012) Melinda R. Baerwald et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Effects of thermal acclimation on transcriptional responses to acute heat stress in the eurythermal fish Gillichthys mirabilis (Cooper)

(2011) Cheryl A. Logan et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Climatic Predictors of Temperature Performance Curve Parameters in Ectotherms Imply Complex Responses to Climate Change

(2011) Susana Clusella-Trullas et al.   AMERICAN NATURALIST

Do invasive species show higher phenotypic plasticity than native species and, if so, is it adaptive? A meta-analysis

(2011) Amy Michelle Davidson et al.   ECOLOGY LETTERS

Life Histories, Salinity Zones, and Sublethal Contributions of Contaminants to Pelagic Fish Declines Illustrated with a Case Study of San Francisco Estuary, California, USA

(2011) Marjorie L. Brooks et al.   Estuaries and Coasts

Multispecies comparison reveals that invasive and native plants differ in their traits but not in their plasticity

(2011) Oscar Godoy et al.   FUNCTIONAL ECOLOGY

Thermal Performance Curves, Phenotypic Plasticity, and the Time Scales of Temperature Exposure

(2011) P. M. Schulte et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

Invasive plants do not display greater phenotypic plasticity than their native or non-invasive counterparts: a meta-analysis

(2011) Kattia Palacio-López et al.   OIKOS

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

(2011) S. U. Franssen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differences in Thermal Tolerance Among Sockeye Salmon Populations

(2011) E. J. Eliason et al.   SCIENCE

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

(2010) G. Yu et al.   BIOINFORMATICS

Interacting Effects of Phenotypic Plasticity and Evolution on Population Persistence in a Changing Climate

(2010) THOMAS E. REED et al.   CONSERVATION BIOLOGY

Shifts in Zooplankton Community Structure: Implications for Food Web Processes in the Upper San Francisco Estuary

(2010) Monika Winder et al.   Estuaries and Coasts

Global analysis of thermal tolerance and latitude in ectotherms

(2010) J. M. Sunday et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Impact of Climate Change on the World's Marine Ecosystems

(2010) O. Hoegh-Guldberg et al.   SCIENCE

A framework for community interactions under climate change

(2010) Sarah E. Gilman et al.   TRENDS IN ECOLOGY & EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Animal performance and stress: responses and tolerance limits at different levels of biological organisation

(2009) Karin S. Kassahn et al.   BIOLOGICAL REVIEWS

Rapid evolution in introduced species, ‘invasive traits’ and recipient communities: challenges for predicting invasive potential

(2009) Kenneth D. Whitney et al.   DIVERSITY AND DISTRIBUTIONS

ADAPTIVE DIVERGENCE BETWEEN FRESHWATER AND MARINE STICKLEBACKS: INSIGHTS INTO THE ROLE OF PHENOTYPIC PLASTICITY FROM AN INTEGRATED ANALYSIS OF CANDIDATE GENE EXPRESSION

(2009) R. J. Scott McCairns et al.   EVOLUTION

From cells to coastlines: how can we use physiology to forecast the impacts of climate change?

(2009) B. Helmuth   JOURNAL OF EXPERIMENTAL BIOLOGY

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

Managing Water to Protect Fish: A Review of California’s Environmental Water Account, 2001–2005

(2008) Larry R. Brown et al.   ENVIRONMENTAL MANAGEMENT

Assessing the global threat of invasive species to marine biodiversity

(2008) Jennifer L Molnar et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

Impacts of climate warming on terrestrial ectotherms across latitude

(2008) C. A. Deutsch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ECOLOGY: Physiology and Climate Change

(2008) H. O. Portner et al.   SCIENCE

Thermal tolerance, acclimatory capacity and vulnerability to global climate change

(2007) P. Calosi et al.   Biology Letters