Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ
出版年份 2020 全文链接
标题
Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ
作者
关键词
structural proteomics, mass spectrometry, limited proteolysis, structural systems biology, protein aggregation, functional proteomics, metabolism, structural biology, yeast, E. coli
出版物
CELL
Volume 184, Issue 2, Pages 545-559.e22
出版商
Elsevier BV
发表日期
2020-12-23
DOI
10.1016/j.cell.2020.12.021
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags
- (2020) Aaron J. Storey et al. JOURNAL OF PROTEOME RESEARCH
- Human Glycerol 3-Phosphate Dehydrogenase: X-Ray Crystal Structures that Guide the Interpretation of Mutagenesis Studies
- (2019) Lisa S. Mydy et al. BIOCHEMISTRY
- Cryo-EM Structures of the Hsp104 Protein Disaggregase Captured in the ATP Conformation
- (2019) Sukyeong Lee et al. Cell Reports
- Structures suggest a mechanism for energy coupling by a family of organic anion transporters
- (2019) Jonathan B. Leano et al. PLOS BIOLOGY
- Systematic mapping of protein‐metabolite interactions in central metabolism of Escherichia coli
- (2019) Maren Diether et al. Molecular Systems Biology
- A Map of Protein-Metabolite Interactions Reveals Principles of Chemical Communication
- (2018) Ilaria Piazza et al. CELL
- A system-wide approach to monitor responses to synergistic BRAF and EGFR inhibition in colorectal cancer cells
- (2018) Anna Ressa et al. MOLECULAR & CELLULAR PROTEOMICS
- Thermal proximity coaggregation for system-wide profiling of protein complex dynamics in cells
- (2018) Chris Soon Heng Tan et al. SCIENCE
- Large-Scale Phosphoproteomics Reveals Shp-2 Phosphatase-Dependent Regulators of Pdgf Receptor Signaling
- (2018) Tanveer S. Batth et al. Cell Reports
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- The crucial role of protein phosphorylation in cell signaling and its use as targeted therapy (Review)
- (2017) Fatima Ardito et al. INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE
- The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for coexisting respiratory supercomplexes
- (2017) Fan Liu et al. MOLECULAR & CELLULAR PROTEOMICS
- Ratchet-like polypeptide translocation mechanism of the AAA+ disaggregase Hsp104
- (2017) Stephanie N. Gates et al. SCIENCE
- Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability
- (2017) Pascal Leuenberger et al. SCIENCE
- Development of a Microflow System for In-Cell Footprinting Coupled with Mass Spectrometry
- (2016) Aimee Rinas et al. ANALYTICAL CHEMISTRY
- Mass-spectrometric exploration of proteome structure and function
- (2016) Ruedi Aebersold et al. NATURE
- Proteogenomics connects somatic mutations to signalling in breast cancer
- (2016) Philipp Mertins et al. NATURE
- Functional characterization of somatic mutations in cancer using network-based inference of protein activity
- (2016) Mariano J Alvarez et al. NATURE GENETICS
- Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli
- (2016) Daniel C Sévin et al. NATURE METHODS
- Absolute protein quantification of the yeast chaperome under conditions of heat shock
- (2016) Rebecca J. Mackenzie et al. PROTEOMICS
- In vivo aspects of protein folding and quality control
- (2016) D. Balchin et al. SCIENCE
- Analysis of crystal structure of Arabidopsis MPK6 and generation of its mutants with higher activity
- (2016) Bo Wang et al. Scientific Reports
- Reversible, Specific, Active Aggregates of Endogenous Proteins Assemble upon Heat Stress
- (2015) Edward W.J. Wallace et al. CELL
- A Global Map of Lipid-Binding Proteins and Their Ligandability in Cells
- (2015) Micah J. Niphakis et al. CELL
- An integrated view on a eukaryotic osmoregulation system
- (2015) Stefan Hohmann CURRENT GENETICS
- Phosphoproteome dynamics of Saccharomyces cerevisiae under heat shock and cold stress
- (2015) E. Kanshin et al. Molecular Systems Biology
- High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics
- (2015) Sean J Humphrey et al. NATURE BIOTECHNOLOGY
- The quantitative and condition-dependent Escherichia coli proteome
- (2015) Alexander Schmidt et al. NATURE BIOTECHNOLOGY
- Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry
- (2015) Fan Liu et al. NATURE METHODS
- Proteome-wide drug and metabolite interaction mapping by thermal-stability profiling
- (2015) Kilian V M Huber et al. NATURE METHODS
- Optimization of a Dibenzodiazepine Hit to a Potent and Selective Allosteric PAK1 Inhibitor
- (2015) Alexei S. Karpov et al. ACS Medicinal Chemistry Letters
- Pseudo-transition Analysis Identifies the Key Regulators of Dynamic Metabolic Adaptations from Steady-State Data
- (2015) Luca Gerosa et al. Cell Systems
- MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments
- (2014) Meena Choi et al. BIOINFORMATICS
- A proteomic survey of widespread protein aggregation in yeast
- (2014) Jeremy D. O'Connell et al. Molecular BioSystems
- Global analysis of protein structural changes in complex proteomes
- (2014) Yuehan Feng et al. NATURE BIOTECHNOLOGY
- Coordination of microbial metabolism
- (2014) Victor Chubukov et al. NATURE REVIEWS MICROBIOLOGY
- Tracking cancer drugs in living cells by thermal profiling of the proteome
- (2014) M. M. Savitski et al. SCIENCE
- Hog1: 20 years of discovery and impact
- (2014) J. L. Brewster et al. Science Signaling
- The Underappreciated Role of Allostery in the Cellular Network
- (2013) Ruth Nussinov et al. Annual Review of Biophysics
- Edgotype: a fundamental link between genotype and phenotype
- (2013) Nidhi Sahni et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data
- (2013) Jing Huang et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Functioning of a metabolic flux sensor in Escherichia coli
- (2013) K. Kochanowski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural Systems Biology Evaluation of Metabolic Thermotolerance in Escherichia coli
- (2013) R. L. Chang et al. SCIENCE
- pH sensing and regulation in cancer
- (2013) Mehdi Damaghi et al. Frontiers in Physiology
- Biology of the Heat Shock Response and Protein Chaperones: Budding Yeast (Saccharomyces cerevisiae) as a Model System
- (2012) J. Verghese et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Reciprocal Phosphorylation of Yeast Glycerol-3-Phosphate Dehydrogenases in Adaptation to Distinct Types of Stress
- (2012) Y. J. Lee et al. MOLECULAR AND CELLULAR BIOLOGY
- High-Throughput, Accurate Mass Metabolome Profiling of Cellular Extracts by Flow Injection–Time-of-Flight Mass Spectrometry
- (2011) Tobias Fuhrer et al. ANALYTICAL CHEMISTRY
- Phosphoenolpyruvate: Sugar Phosphotransferase System from the HyperthermophilicThermoanaerobacter tengcongensis
- (2011) Vera Navdaeva et al. BIOCHEMISTRY
- The Crystal Structures of Eukaryotic Phosphofructokinases from Baker's Yeast and Rabbit Skeletal Muscle
- (2011) Katarzyna Banaszak et al. JOURNAL OF MOLECULAR BIOLOGY
- Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics
- (2011) R. Costenoble et al. Molecular Systems Biology
- α-ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition
- (2011) Christopher D Doucette et al. Nature Chemical Biology
- mProphet: automated data processing and statistical validation for large-scale SRM experiments
- (2011) Lukas Reiter et al. NATURE METHODS
- Molecular architecture and structural basis of allosteric regulation of eukaryotic phosphofructokinases
- (2010) Norbert Sträter et al. FASEB JOURNAL
- Defining the Human Deubiquitinating Enzyme Interaction Landscape
- (2009) Mathew E. Sowa et al. CELL
- Crystal Structure of Enzyme I of the Phosphoenolpyruvate Sugar Phosphotransferase System in the Dephosphorylated State
- (2009) Anselm E. Oberholzer et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- CHARMM: The biomolecular simulation program
- (2009) B. R. Brooks et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- A Quantitative Proteomics Analysis of Subcellular Proteome Localization and Changes Induced by DNA Damage
- (2009) François-Michel Boisvert et al. MOLECULAR & CELLULAR PROTEOMICS
- Global analysis of the yeast osmotic stress response by quantitative proteomics
- (2009) Boumediene Soufi et al. Molecular BioSystems
- An atlas of chaperone–protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell
- (2009) Yunchen Gong et al. Molecular Systems Biology
- Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
- (2009) Bryson D Bennett et al. Nature Chemical Biology
- Quantitative interaction proteomics using mass spectrometry
- (2009) Alexander Wepf et al. NATURE METHODS
- Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima
- (2009) Y. Zhang et al. SCIENCE
- Activity-Based Protein Profiling: From Enzyme Chemistry to Proteomic Chemistry
- (2008) Benjamin F. Cravatt et al. Annual Review of Biochemistry
- Structural and Biochemical Characterization of the Type II Fructose-1,6-bisphosphatase GlpX fromEscherichia coli
- (2008) Greg Brown et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started