Assessing the Variation within the Oral Microbiome of Healthy Adults

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Sociodemographic variation in the oral microbiome

(2019) Audrey Renson et al.   ANNALS OF EPIDEMIOLOGY

Gender-Specific Associations Between Saliva Microbiota and Body Size

(2019) Sajan C. Raju et al.   Frontiers in Microbiology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data

(2019) Dmitry Shungin et al.   Nature Communications

Establishing microbial composition measurement standards with reference frames

(2019) James T. Morton et al.   Nature Communications

Association of Coffee and Tea Intake with the Oral Microbiome: Results from a Large Cross-Sectional Study

(2018) Brandilyn A. Peters et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

The microbiome in prostate inflammation and prostate cancer

(2018) Corey M. Porter et al.   PROSTATE CANCER AND PROSTATIC DISEASES

Impact of a vegan diet on the human salivary microbiota

(2018) Tue H. Hansen et al.   Scientific Reports

Dysbiosis and Ecotypes of the Salivary Microbiome Associated With Inflammatory Bowel Diseases and the Assistance in Diagnosis of Diseases Using Oral Bacterial Profiles

(2018) Zhe Xun et al.   Frontiers in Microbiology

Characterization of the salivary microbiome in people with obesity

(2018) Yujia Wu et al.   PeerJ

Drinking alcohol is associated with variation in the human oral microbiome in a large study of American adults

(2018) Xiaozhou Fan et al.   Microbiome

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

(2018) Stefan Janssen et al.   mSystems

The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies

(2018) Jolinda Pollock et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Differences in adiposity and diet quality among individuals with inflammatory bowel disease in Eastern Canada

(2018) Vanessa DeClercq et al.   PLoS One

The oral microbiota in colorectal cancer is distinctive and predictive

(2017) Burkhardt Flemer et al.   GUT

Cohort Profile: The Atlantic Partnership for Tomorrow’s Health (Atlantic PATH) Study

(2017) E Sweeney et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium

(2017) Rashmi Sinha et al.   NATURE BIOTECHNOLOGY

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

(2017) André M. Comeau et al.   mSystems

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Human oral microbiome and prospective risk for pancreatic cancer: a population-based nested case-control study

(2016) Xiaozhou Fan et al.   GUT

Cigarette smoking and the oral microbiome in a large study of American adults

(2016) Jing Wu et al.   ISME Journal

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Bacterial diversity in saliva and oral health-related conditions: the Hisayama Study

(2016) Toru Takeshita et al.   Scientific Reports

PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R

(2015) Jan Grau et al.   BIOINFORMATICS

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa

(2014) Jing Li et al.   BMC MICROBIOLOGY

The Same Microbiota and a Potentially Discriminant Metabolome in the Saliva of Omnivore, Ovo-Lacto-Vegetarian and Vegan Individuals

(2014) Francesca De Filippis et al.   PLoS One

Bacterial profiles of saliva in relation to diet, lifestyle factors, and socioeconomic status

(2014) Daniel Belstrøm et al.   Journal of Oral Microbiology

Dysbiosis of Salivary Microbiota in Inflammatory Bowel Disease and Its Association With Oral Immunological Biomarkers

(2013) H. S. Said et al.   DNA RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Deep Sequencing Identifies Ethnicity-Specific Bacterial Signatures in the Oral Microbiome

(2013) Matthew R. Mason et al.   PLoS One

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The oral microbiome in health and disease

(2012) William G. Wade   PHARMACOLOGICAL RESEARCH

Periodontal health status and bacteraemia from daily oral activities: systematic review/meta-analysis

(2011) Inmaculada Tomás et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

The Human Oral Microbiome

(2010) F. E. Dewhirst et al.   JOURNAL OF BACTERIOLOGY

The Role of Bacteria in the Caries Process

(2010) N. Takahashi et al.   JOURNAL OF DENTAL RESEARCH

Defining the healthy "core microbiome" of oral microbial communities

(2009) Egija Zaura et al.   BMC MICROBIOLOGY

Global diversity in the human salivary microbiome

(2009) I. Nasidze et al.   GENOME RESEARCH

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

(2008) Z. Liu et al.   NUCLEIC ACIDS RESEARCH