Genomic prediction of fruit texture and training population optimization towards the application of genomic selection in apple

The multi-site PeachRefPop collection: a true cultural heritage and international scientific tool for fruit trees

(2020) Marco Cirilli et al.   PLANT PHYSIOLOGY

Design of training populations for selective phenotyping in genomic prediction

(2019) Deniz Akdemir et al.   Scientific Reports

A Multifaceted Overview of Apple Tree Domestication

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A Genome-Wide Association Study of Apple Quality and Scab Resistance

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Small ad hoc versus large general training populations for genomewide selection in maize biparental crosses

(2018) Sofía P. Brandariz et al.   THEORETICAL AND APPLIED GENETICS

Accelerating crop genetic gains with genomic selection

(2018) Kai Peter Voss-Fels et al.   THEORETICAL AND APPLIED GENETICS

Deciphering the genetic control of fruit texture in apple by multiple family-based analysis and genome-wide association

(2017) Mario Di Guardo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits

(2017) Mai F. Minamikawa et al.   Scientific Reports

Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level

(2016) Jorge Urrestarazu et al.   BMC PLANT BIOLOGY

Genome to Phenome Mapping in Apple Using Historical Data

(2016) Zoë Migicovsky et al.   Plant Genome

Adding Genetically Distant Individuals to Training Populations Reduces Genomic Prediction Accuracy in Barley

(2015) Aaron J. Lorenz et al.   CROP SCIENCE

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes

(2015) Albert Wilhelm Schulthess et al.   THEORETICAL AND APPLIED GENETICS

Apple fruit texture QTLs: year and cold storage effects on sensory and instrumental traits

(2015) Inès Ben Sadok et al.   Tree Genetics & Genomes

Accuracy and responses of genomic selection on key traits in apple breeding

(2015) Hélène Muranty et al.   Horticulture Research

Genomics: A potential panacea for the perennial problem

(2014) Kendra A. McClure et al.   AMERICAN JOURNAL OF BOTANY

Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)

(2014) Luca Bianco et al.   PLoS One

Genomic prediction for rust resistance in diverse wheat landraces

(2014) Hans D. Daetwyler et al.   THEORETICAL AND APPLIED GENETICS

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection in sugar beet breeding populations

(2013) Tobias Würschum et al.   BMC GENETICS

A candidate gene based approach validates Md-PG1 as the main responsible for a QTL impacting fruit texture in apple (Malus x domestica Borkh)

(2013) Sara Longhi et al.   BMC PLANT BIOLOGY

Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.)

(2012) R. Rincent et al.   GENETICS

Can genomics boost productivity of orphan crops?

(2012) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Texture dynamics during postharvest cold storage ripening in apple (Malus×domestica Borkh.)

(2012) Fabrizio Costa et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Comprehensive QTL mapping survey dissects the complex fruit texture physiology in apple (Malus x domestica Borkh.).

(2011) Sara Longhi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Assessment of apple (Malus×domestica Borkh.) fruit texture by a combined acoustic-mechanical profiling strategy

(2011) Fabrizio Costa et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Estimation of genetic parameters and prediction of breeding values for apple fruit-quality traits using pedigreed plant material in Europe

(2009) Abou Bakari Kouassi et al.   Tree Genetics & Genomes

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Genomic selection: prediction of accuracy and maximisation of long term response

(2008) Mike Goddard   GENETICA

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE