Comparison of the diversity of cultured and total bacterial communities in marine sediment using culture-dependent and sequencing methods

High proportions of bacteria and archaea across most biomes remain uncultured

(2019) Andrew D. Steen et al.   ISME Journal

Culturing uncultivated bacteria

(2019) Lei Tang   NATURE METHODS

Culture-dependent and metagenomic analysis of lesser horseshoe bats’ gut microbiome revealing unique bacterial diversity and signatures of potential human pathogens

(2019) Joseph Selvin et al.   MICROBIAL PATHOGENESIS

Identification and characterization of a novel cold-tolerant extracellular protease from Planococcus sp. CGMCC 8088

(2018) Kun Chen et al.   EXTREMOPHILES

cAMP-CRP acts as a key regulator for the viable but non-culturable state in Escherichia coli

(2018) Kazuki Nosho et al.   MICROBIOLOGY-SGM

Functional Genetic Diversity and Culturability of Petroleum-Degrading Bacteria Isolated From Oil-Contaminated Soils

(2018) Ji-Quan Sun et al.   Frontiers in Microbiology

Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes

(2018) Karen G. Lloyd et al.   mSystems

GABA-modulating bacteria of the human gut microbiota

(2018) Philip Strandwitz et al.   Nature Microbiology

Comparative analysis of bacterial diversity in the rhizosphere of tomato by culture-dependent and -independent approaches

(2016) Shin Ae Lee et al.   JOURNAL OF MICROBIOLOGY

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Large Differences in Bacterial Community Composition among Three Nearby Extreme Waterbodies of the High Andean Plateau

(2016) Pablo Aguilar et al.   Frontiers in Microbiology

Culture of previously uncultured members of the human gut microbiota by culturomics

(2016) Jean-Christophe Lagier et al.   Nature Microbiology

Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico

(2016) Michael W. Henson et al.   mSphere

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Analyses of Intestinal Microbiota: Culture versus Sequencing: Figure 1

(2015) Andreas Hiergeist et al.   ILAR JOURNAL

Pseudomonas salina sp. nov., isolated from a salt lake

(2015) Zhi-Ping Zhong et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A new antibiotic kills pathogens without detectable resistance

(2015) Losee L. Ling et al.   NATURE

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

A Hidden Pitfall in the Preparation of Agar Media Undermines Microorganism Cultivability

(2014) Tomohiro Tanaka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Arthrobacter pityocampae sp. nov., isolated from Thaumetopoea pityocampa (Lep., Thaumetopoeidae)

(2014) I. A. Ince et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Clostridium algifaecis sp. nov., an anaerobic bacterial species from decomposing algal scum

(2014) Y.-F. Wu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

(2014) M. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The importance of the viable but non-culturable state in human bacterial pathogens

(2014) Laam Li et al.   Frontiers in Microbiology

Intragenomic Heterogeneity of 16S rRNA Genes Causes Overestimation of Prokaryotic Diversity

(2013) Dong-Lei Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Culturing captures members of the soil rare biosphere

(2012) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Growing Unculturable Bacteria

(2012) E. J. Stewart   JOURNAL OF BACTERIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

(2011) O.-S. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Resuscitation of Escherichia coli VBNC cells depends on a variety of environmental or chemical stimuli

(2011) D. Pinto et al.   JOURNAL OF APPLIED MICROBIOLOGY

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

The microbial nitrogen cycle

(2008) Mike S. M. Jetten   ENVIRONMENTAL MICROBIOLOGY

SAR11 marine bacteria require exogenous reduced sulphur for growth

(2008) H. James Tripp et al.   NATURE