Mimicking prophage induction in the body: induction in the lab with pH gradients

Prediction, Diversity, and Genomic Analysis of Temperate Phages Induced From Shiga Toxin-Producing Escherichia coli Strains

(2020) Yujie Zhang et al.   Frontiers in Microbiology

Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil

(2020) Pauline C. Göller et al.   Microbiome

Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome

(2020) Lance Boling et al.   Gut Microbes

Characterization and spontaneous induction of urinary tract Streptococcus anginosus prophages

(2020) Bridget Brassil et al.   JOURNAL OF GENERAL VIROLOGY

Honey bees harbor a diverse gut virome engaging in nested strain-level interactions with the microbiota

(2020) Germán Bonilla-Rosso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in Understanding the Human Urinary Microbiome and Its Potential Role in Urinary Tract Infection

(2020) Michael L. Neugent et al.   mBio

Dietary Fructose and Microbiota-Derived Short-Chain Fatty Acids Promote Bacteriophage Production in the Gut Symbiont Lactobacillus reuteri

(2019) Jee-Hwan Oh et al.   Cell Host & Microbe

Harmful algal blooms: A climate change co-stressor in marine and freshwater ecosystems

(2019) Andrew W. Griffith et al.   HARMFUL ALGAE

Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes

(2019) Samuel Verbanic et al.   BMC MICROBIOLOGY

Association between urine pH and common uropathogens in children with urinary tract infections

(2019) Huan-Cheng Lai et al.   JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION

Lysogeny is prevalent and widely distributed in the murine gut microbiota

(2018) Min-Soo Kim et al.   ISME Journal

Bacteriophages of the Urinary Microbiome

(2018) Taylor Miller-Ensminger et al.   JOURNAL OF BACTERIOLOGY

Culturing of female bladder bacteria reveals an interconnected urogenital microbiota

(2018) Krystal Thomas-White et al.   Nature Communications

Changes in soil surface chemistry after fifty years of tillage and nitrogen fertilization

(2017) Augustine K. Obour et al.   GEODERMA

Inflammation boosts bacteriophage transfer between Salmonella spp.

(2017) Médéric Diard et al.   SCIENCE

The Clinical Urine Culture: Enhanced Techniques Improve Detection of Clinically Relevant Microorganisms

(2016) Travis K. Price et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Lytic to temperate switching of viral communities

(2016) B. Knowles et al.   NATURE

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Healthy human gut phageome

(2016) Pilar Manrique et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of standard, quantitative and digital PCR in the detection of enterotoxigenic Bacteroides fragilis

(2016) Rachel V. Purcell et al.   Scientific Reports

The female urinary microbiome in urgency urinary incontinence

(2015) Meghan M. Pearce et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

(2015) Manuel Kleiner et al.   BMC GENOMICS

Incontinence medication response relates to the female urinary microbiota

(2015) Krystal J. Thomas-White et al.   INTERNATIONAL UROGYNECOLOGY JOURNAL

The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome

(2015) Geoffrey D. Hannigan et al.   mBio

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut

(2015) Josué L. Castro-Mejía et al.   Microbiome

SPEED OF ADAPTATION AND GENOMIC FOOTPRINTS OF HOST-PARASITE COEVOLUTION UNDER ARMS RACE AND TRENCH WARFARE DYNAMICS

(2014) Aurélien Tellier et al.   EVOLUTION

Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions

(2014) Arun M. Nanda et al.   JOURNAL OF BACTERIOLOGY

Altered Oral Viral Ecology in Association with Periodontal Disease

(2014) M. Ly et al.   mBio

The Female Urinary Microbiome: a Comparison of Women with and without Urgency Urinary Incontinence

(2014) M. M. Pearce et al.   mBio

Bacteriophages in Gut Samples From Pediatric Crohn’s Disease Patients

(2013) Josef Wagner et al.   INFLAMMATORY BOWEL DISEASES

Urine Is Not Sterile: Use of Enhanced Urine Culture Techniques To Detect Resident Bacterial Flora in the Adult Female Bladder

(2013) E. E. Hilt et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Bacteriophage adhering to mucus provide a non-host-derived immunity

(2013) J. J. Barr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome

(2011) David T Pride et al.   ISME Journal

Temperature-induced activation of freshwater Cyanophage AS-1 prophage

(2010) Tin-Chun Chu et al.   ACTA HISTOCHEMICA

Acetic acid increases the phage-encoded enterotoxin A expression in Staphylococcus aureus

(2010) Nina Wallin-Carlquist et al.   BMC MICROBIOLOGY

Hydrogen peroxide-mediated induction of the Shiga toxinconverting lambdoid prophage ST2-8624 inEscherichia coliO157:H7

(2010) Joanna M. Łoś et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Viruses in the faecal microbiota of monozygotic twins and their mothers

(2010) Alejandro Reyes et al.   NATURE

Various physico-chemical stress factors cause prophage induction in Nitrosospira multiformis 25196- an ammonia oxidizing bacteria

(2010) Jeongdong Choi et al.   WATER RESEARCH

Differential efficiency of induction of various lambdoid prophages responsible for production of Shiga toxins in response to different induction agents

(2009) Joanna M. Łoś et al.   MICROBIAL PATHOGENESIS

Explaining microbial population genomics through phage predation

(2009) Francisco Rodriguez-Valera et al.   NATURE REVIEWS MICROBIOLOGY

Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes

(2008) J. A. Frank et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY