An Improved hgcAB Primer Set and Direct High-Throughput Sequencing Expand Hg-Methylator Diversity in Nature

Marine mercury-methylating microbial communities from coastal to Capbreton Canyon sediments (North Atlantic Ocean)

(2020) Alyssa Azaroff et al.   ENVIRONMENTAL POLLUTION

Molecular evidence for novel mercury methylating microorganisms in sulfate-impacted lakes

(2019) Daniel S. Jones et al.   ISME Journal

The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data

(2019) Marc A. Sze et al.   mSphere

Determining the Reliability of Measuring Mercury Cycling Gene Abundance with Correlations with Mercury and Methylmercury Concentrations

(2019) Geoff A. Christensen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biotic formation of methylmercury: A bio–physico–chemical conundrum

(2019) Andrea G. Bravo et al.   LIMNOLOGY AND OCEANOGRAPHY

Genome insights of mercury methylation among Desulfovibrio and Pseudodesulfovibrio strains

(2019) Marisol Goñi-Urriza et al.   RESEARCH IN MICROBIOLOGY

The assessment and remediation of mercury contaminated sites: A review of current approaches

(2019) Chris S. Eckley et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Challenges and opportunities for managing aquatic mercury pollution in altered landscapes

(2018) Heileen Hsu-Kim et al.   AMBIO

Modulators of mercury risk to wildlife and humans in the context of rapid global change

(2018) Collin A. Eagles-Smith et al.   AMBIO

Quantification of Mercury Bioavailability for Methylation Using Diffusive Gradient in Thin-Film Samplers

(2018) Udonna Ndu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by waste water releases

(2018) Andrea G. Bravo et al.   ISME Journal

Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics

(2018) Simon Ardui et al.   NUCLEIC ACIDS RESEARCH

Robust Mercury Methylation across Diverse Methanogenic Archaea

(2018) Cynthia C. Gilmour et al.   mBio

Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China

(2018) Tatiana A. Vishnivetskaya et al.   Environmental Science-Processes & Impacts

Diversity of microbial communities potentially involved in mercury methylation in rice paddies surrounding typical mercury mining areas in China

(2018) Xin Liu et al.   MicrobiologyOpen

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

(2018) Alexander J. Probst et al.   Nature Microbiology

Clustering of circular consensus sequences: accurate error correction and assembly of single molecule real-time reads from multiplexed amplicon libraries

(2018) Felix Francis et al.   BMC BIOINFORMATICS

Unraveling Microbial Communities Associated with Methylmercury Production in Paddy Soils

(2018) Yu-Rong Liu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform

(2017) Eric J. de Muinck et al.   Microbiome

Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment

(2016) Geoff A. Christensen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cognitive deficits at age 22 years associated with prenatal exposure to methylmercury

(2016) Frodi Debes et al.   CORTEX

Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics

(2016) Claus Pelikan et al.   ENVIRONMENTAL MICROBIOLOGY

Periphyton Biofilms Influence Net Methylmercury Production in an Industrially Contaminated System

(2016) Todd A. Olsen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Mercury-methylating genes dsrB and hgcA in soils/sediments of the Three Gorges Reservoir

(2016) Hongxia Du et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction

(2016) Kiley W Seitz et al.   ISME Journal

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

(2016) Matthew L Bendall et al.   ISME Journal

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Microbial mercury methylation in Antarctic sea ice

(2016) Caitlin M. Gionfriddo et al.   Nature Microbiology

The EMBL-EBI bioinformatics web and programmatic tools framework

(2015) Weizhong Li et al.   NUCLEIC ACIDS RESEARCH

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

Global prevalence and distribution of genes and microorganisms involved in mercury methylation

(2015) M. Podar et al.   Science Advances

Under-detection of endospore-forming Firmicutes in metagenomic data

(2015) Sevasti Filippidou et al.   Computational and Structural Biotechnology Journal

Syntrophs Dominate Sequences Associated with the Mercury Methylation-Related GenehgcAin the Water Conservation Areas of the Florida Everglades

(2014) Hee-Sung Bae et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analysis of the Microbial Community Structure by Monitoring an Hg Methylation Gene (hgcA) in Paddy Soils along an Hg Gradient

(2014) Y.-R. Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Mercury Methylation by the Methanogen Methanospirillum hungatei

(2013) Ri-Qing Yu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mechanisms Regulating Mercury Bioavailability for Methylating Microorganisms in the Aquatic Environment: A Critical Review

(2013) Heileen Hsu-Kim et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Mercury Methylation by Novel Microorganisms from New Environments

(2013) Cynthia C. Gilmour et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The Genetic Basis for Bacterial Mercury Methylation

(2013) J. M. Parks et al.   SCIENCE

Detection of a key Hg methylation gene,hgcA, in wetland soils

(2013) J. K. Schaefer et al.   Environmental Microbiology Reports

Characterization of the Deltaproteobacteria in contaminated and uncontaminated stream sediments and identification of potential mercury methylators

(2012) JJ Mosher et al.   AQUATIC MICROBIAL ECOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

PCR inhibitors - occurrence, properties and removal

(2012) C. Schrader et al.   JOURNAL OF APPLIED MICROBIOLOGY

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

(2012) Charles K. Lee et al.   PLoS One

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

History of mercury use and environmental contamination at the Oak Ridge Y-12 Plant

(2010) Scott C. Brooks et al.   ENVIRONMENTAL POLLUTION

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Overview of Mercury Methylation Capacities among Anaerobic Bacteria Including Representatives of the Sulphate-Reducers: Implications for Environmental Studies

(2009) M. Ranchou-Peyruse et al.   GEOMICROBIOLOGY JOURNAL

The Effect of Primer-Template Mismatches on the Detection and Quantification of Nucleic Acids Using the 5′ Nuclease Assay

(2009) Ralph Stadhouders et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Methylmercury production in a Chesapeake Bay salt marsh

(2008) Carl P. J. Mitchell et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH