The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data
出版年份 2019 全文链接
标题
The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data
作者
关键词
-
出版物
mSphere
Volume 4, Issue 3, Pages -
出版商
American Society for Microbiology
发表日期
2019-05-21
DOI
10.1128/msphere.00163-19
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors
- (2018) Marc A. Sze et al. mBio
- Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research
- (2018) Patrick D. Schloss mBio
- Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates
- (2018) Francesco Multinu et al. mSphere
- Earth Microbiome Project and Global Systems Biology
- (2018) Jack A. Gilbert et al. mSystems
- Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
- (2017) Rashmi Sinha et al. NATURE BIOTECHNOLOGY
- Towards standards for human fecal sample processing in metagenomic studies
- (2017) Paul I Costea et al. NATURE BIOTECHNOLOGY
- OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
- (2017) Sarah L. Westcott et al. mSphere
- Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
- (2017) Amnon Amir et al. mSystems
- Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping
- (2017) Amnon Amir et al. mSystems
- Examining Sources of Error in PCR by Single-Molecule Sequencing
- (2017) Vladimir Potapov et al. PLoS One
- Effects of Specimen Collection Methodologies and Storage Conditions on the Short-Term Stability of Oral Microbiome Taxonomy
- (2016) Ting Luo et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Toward Accurate and Quantitative Comparative Metagenomics
- (2016) Stephen Nayfach et al. CELL
- Skin Microbiome Surveys Are Strongly Influenced by Experimental Design
- (2016) Jacquelyn S. Meisel et al. JOURNAL OF INVESTIGATIVE DERMATOLOGY
- Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
- (2016) Daryl M Gohl et al. NATURE BIOTECHNOLOGY
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- The impact of sampling, PCR, and sequencing replication on discerning changes in drinking water bacterial community over diurnal time-scales
- (2016) Quyen Melina Bautista-de los Santos et al. WATER RESEARCH
- Status of the Archaeal and Bacterial Census: an Update
- (2016) Patrick D. Schloss et al. mBio
- Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome
- (2016) Marc A. Sze et al. mBio
- Dynamics of the fecal microbiome in patients with recurrent and nonrecurrent Clostridium difficile infection
- (2016) Anna Maria Seekatz et al. Genome Medicine
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
- (2016) Se Jin Song et al. mSystems
- The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
- (2015) J Paul Brooks et al. BMC MICROBIOLOGY
- Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies
- (2015) R. Sinha et al. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
- Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
- (2015) Alma E. Parada et al. ENVIRONMENTAL MICROBIOLOGY
- Sources of PCR-induced distortions in high-throughput sequencing data sets
- (2015) Justus M. Kebschull et al. NUCLEIC ACIDS RESEARCH
- Methods for Improving Human Gut Microbiome Data by Reducing Variability through Sample Processing and Storage of Stool
- (2015) Monika A. Gorzelak et al. PLoS One
- Evaluating Bias of Illumina-Based Bacterial 16S rRNA Gene Profiles
- (2014) Katherine Kennedy et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Comparison of methods for fecal microbiome biospecimen collection
- (2014) Christine Dominianni et al. BMC MICROBIOLOGY
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
- (2013) James J. Kozich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Removing Noise From Pyrosequenced Amplicons
- (2011) Christopher Quince et al. BMC BIOINFORMATICS
- Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
- (2011) B. J. Haas et al. GENOME RESEARCH
- Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
- (2011) Patrick D. Schloss et al. PLoS One
- Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples
- (2010) Christian L. Lauber et al. FEMS MICROBIOLOGY LETTERS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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