标题
A multimodal computational pipeline for 3D histology of the human brain
作者
关键词
-
出版物
Scientific Reports
Volume 10, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-08-14
DOI
10.1038/s41598-020-69163-z
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Volumetric chemical imaging by clearing-enhanced stimulated Raman scattering microscopy
- (2019) Mian Wei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- VERDICT MRI validation in fresh and fixed prostate specimens using patient-specific moulds for histological and MR alignment
- (2019) Colleen Bailey et al. NMR IN BIOMEDICINE
- MR Imaging-Histology Correlation by Tailored 3D-Printed Slicer in Oncological Assessment
- (2019) D. Baldi et al. Contrast Media & Molecular Imaging
- Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy
- (2019) Lamiae Abdeladim et al. Nature Communications
- A high-throughput neurohistological pipeline for brain-wide mesoscale connectivity mapping of the common marmoset
- (2019) Meng Kuan Lin et al. eLife
- Robust 3D image reconstruction of pancreatic cancer tumors from histopathological images with different stains and its quantitative performance evaluation
- (2019) Mauricio Kugler et al. International Journal of Computer Assisted Radiology and Surgery
- Multimodal characterization of the human nucleus accumbens
- (2019) Samuel CD. Cartmell et al. NEUROIMAGE
- Dense connectomic reconstruction in layer 4 of the somatosensory cortex
- (2019) Alessandro Motta et al. SCIENCE
- Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI
- (2019) Maged Goubran et al. Nature Communications
- Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology
- (2018) Menuka Pallebage-Gamarallage et al. BMC NEUROSCIENCE
- A brief update on physical and optical disector applications and sectioning-staining methods in neuroscience
- (2018) Kıymet Kübra Yurt et al. JOURNAL OF CHEMICAL NEUROANATOMY
- A Survey of Methods for 3D Histology Reconstruction
- (2018) Jonas Pichat et al. MEDICAL IMAGE ANALYSIS
- Microstructural imaging of human neocortex in vivo
- (2018) Luke J. Edwards et al. NEUROIMAGE
- Characterizing the human hippocampus in aging and Alzheimer’s disease using a computational atlas derived from ex vivo MRI and histology
- (2018) Daniel H. Adler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Next generation histology methods for three-dimensional imaging of fresh and archival human brain tissues
- (2018) Hei Ming Lai et al. Nature Communications
- Voxel-wise comparisons of cellular microstructure and diffusion-MRI in mouse hippocampus using 3D Bridging of Optically-clear histology with Neuroimaging Data (3D-BOND)
- (2018) H. B. Stolp et al. Scientific Reports
- On the Usage of Brain Atlases in Neuroimaging Research
- (2018) Andreas Hess et al. MOLECULAR IMAGING AND BIOLOGY
- A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology
- (2018) Juan Eugenio Iglesias et al. NEUROIMAGE
- Effect of Fluorinert on the Histological Properties of Formalin-Fixed Human Brain Tissue
- (2018) Juan Eugenio Iglesias et al. JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY
- SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth
- (2018) Yuankai Huo et al. IEEE TRANSACTIONS ON MEDICAL IMAGING
- Slice-to-volume medical image registration: A survey
- (2017) Enzo Ferrante et al. MEDICAL IMAGE ANALYSIS
- 3D volume reconstruction from serial breast specimen radiographs for mapping between histology and 3D whole specimen imaging
- (2017) Thomy Mertzanidou et al. MEDICAL PHYSICS
- Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology
- (2017) Markus Morawski et al. NEUROIMAGE
- Cortical layers: Cyto-, myelo-, receptor- and synaptic architecture in human cortical areas
- (2017) Nicola Palomero-Gallagher et al. NEUROIMAGE
- Apparatus for Histological Validation of In Vivo and Ex Vivo Magnetic Resonance Imaging of the Human Prostate
- (2017) Roger M. Bourne et al. Frontiers in Oncology
- CUBIC pathology: three-dimensional imaging for pathological diagnosis
- (2017) Satoshi Nojima et al. Scientific Reports
- MIST: Accurate and Scalable Microscopy Image Stitching Tool with Stage Modeling and Error Minimization
- (2017) Joe Chalfoun et al. Scientific Reports
- Comprehensive cellular-resolution atlas of the adult human brain
- (2016) Song-Lin Ding et al. JOURNAL OF COMPARATIVE NEUROLOGY
- Custom fit 3D-printed brain holders for comparison of histology with MRI in marmosets
- (2016) Joseph R. Guy et al. JOURNAL OF NEUROSCIENCE METHODS
- Fast and sequence-adaptive whole-brain segmentation using parametric Bayesian modeling
- (2016) Oula Puonti et al. NEUROIMAGE
- Microstructural models for diffusion MRI in breast cancer and surrounding stroma: an ex vivo study
- (2016) Colleen Bailey et al. NMR IN BIOMEDICINE
- Polarization sensitive optical coherence microscopy for brain imaging
- (2016) Hui Wang et al. OPTICS LETTERS
- High-throughput 3D whole-brain quantitative histopathology in rodents
- (2016) Michel E. Vandenberghe et al. Scientific Reports
- Cascading network failure across the Alzheimer’s disease spectrum
- (2015) David T. Jones et al. BRAIN
- For3D: Full organ reconstruction in 3D, an automatized tool for deciphering the complexity of lymphoid organs
- (2015) Arnauld Sergé et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Registration of in-vivo to ex-vivo MRI of surgically resected specimens: A pipeline for histology to in-vivo registration
- (2015) Maged Goubran et al. JOURNAL OF NEUROSCIENCE METHODS
- Architectonic Mapping of the Human Brain beyond Brodmann
- (2015) Katrin Amunts et al. NEURON
- A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture
- (2015) Hernán Morales-Navarrete et al. eLife
- Spatial normalization of ultrahigh resolution 7 T magnetic resonance imaging data of the postmortem human subthalamic nucleus: a multistage approach
- (2014) Marcel Weiss et al. Brain Structure & Function
- Comparative Evaluation of Registration Algorithms in Different Brain Databases With Varying Difficulty: Results and Insights
- (2014) Yangming Ou et al. IEEE TRANSACTIONS ON MEDICAL IMAGING
- Optimized three-dimensional fast-spin-echo MRI
- (2014) John P. Mugler JOURNAL OF MAGNETIC RESONANCE IMAGING
- Postmortem Magnetic Resonance Imaging to Guide the Pathologic Cut
- (2014) Martina Absinta et al. JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY
- 2D and 3D MALDI-imaging: Conceptual strategies for visualization and data mining
- (2013) Herbert Thiele et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- 3D reconstruction of 2D fluorescence histology images and registration with in vivo MR images: Application in a rodent stroke model
- (2013) Maik Stille et al. JOURNAL OF NEUROSCIENCE METHODS
- CLARITY for mapping the nervous system
- (2013) Kwanghun Chung et al. NATURE METHODS
- Image registration of ex-vivo MRI to sparsely sectioned histology of hippocampal and neocortical temporal lobe specimens
- (2013) Maged Goubran et al. NEUROIMAGE
- Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI
- (2013) Daniel H. Adler et al. NEUROIMAGE
- Blockface histology with optical coherence tomography: A comparison with Nissl staining
- (2013) Caroline Magnain et al. NEUROIMAGE
- BigBrain: An Ultrahigh-Resolution 3D Human Brain Model
- (2013) K. Amunts et al. SCIENCE
- Integration of ultra-high field MRI and histology for connectome based research of brain disorders
- (2013) Shan Yang et al. Frontiers in Neuroanatomy
- FreeSurfer
- (2012) Bruce Fischl NEUROIMAGE
- Accuracy of image registration between MRI and light microscopy in the ex vivo brain
- (2011) Ann S. Choe et al. MAGNETIC RESONANCE IMAGING
- Validation of MRI-based 3D digital atlas registration with histological and autoradiographic volumes: An anatomofunctional transgenic mouse brain imaging study
- (2010) J. Lebenberg et al. NEUROIMAGE
- Fast free-form deformation using graphics processing units
- (2009) Marc Modat et al. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
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