标题
metaFlye: scalable long-read metagenome assembly using repeat graphs
作者
关键词
-
出版物
NATURE METHODS
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-10-06
DOI
10.1038/s41592-020-00971-x
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Complete, closed bacterial genomes from microbiomes using nanopore sequencing
- (2020) Eli L. Moss et al. NATURE BIOTECHNOLOGY
- Re-epithelialization and immune cell behaviour in an ex vivo human skin model
- (2020) Ana Rakita et al. Scientific Reports
- Telomere-to-telomere assembly of a complete human X chromosome
- (2020) Karen H. Miga et al. NATURE
- Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community
- (2019) Satoshi Hiraoka et al. Nature Communications
- The human gut bacterial genotoxin colibactin alkylates DNA
- (2019) Matthew R. Wilson et al. SCIENCE
- Plasmid detection and assembly in genomic and metagenomic datasets
- (2019) Dmitry Antipov et al. GENOME RESEARCH
- Assembly of long, error-prone reads using repeat graphs
- (2019) Mikhail Kolmogorov et al. NATURE BIOTECHNOLOGY
- Ultra-deep, long-read nanopore sequencing of mock microbial community standards
- (2019) Samuel M Nicholls et al. GigaScience
- Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data
- (2019) Krithika Arumugam et al. Microbiome
- Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system
- (2019) Vincent Somerville et al. BMC MICROBIOLOGY
- BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
- (2019) Dmitry Meleshko et al. GENOME RESEARCH
- Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
- (2019) Denis Bertrand et al. NATURE BIOTECHNOLOGY
- Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
- (2019) Robert D. Stewart et al. NATURE BIOTECHNOLOGY
- Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut
- (2019) Yoshihiko Suzuki et al. Microbiome
- A haplotype-aware de novo assembly of related individuals using pedigree sequence graph
- (2019) Shilpa Garg et al. BIOINFORMATICS
- Fast and accurate long-read assembly with wtdbg2
- (2019) Jue Ruan et al. NATURE METHODS
- De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments
- (2019) Bahar Behsaz et al. Cell Systems
- Versatile genome assembly evaluation with QUAST-LG
- (2018) Alla Mikheenko et al. BIOINFORMATICS
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Nanopore sequencing and assembly of a human genome with ultra-long reads
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
- Structural absorption by barbule microstructures of super black bird of paradise feathers
- (2018) Dakota E. McCoy et al. Nature Communications
- Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome
- (2018) Daniela S. Aliaga Goltsman et al. GENOME RESEARCH
- Microbial strain-level population structure and genetic diversity from metagenomes
- (2017) Duy Tin Truong et al. GENOME RESEARCH
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Fast and accurate de novo genome assembly from long uncorrected reads
- (2017) Robert Vaser et al. GENOME RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
- (2017) Alexander Sczyrba et al. NATURE METHODS
- Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
- (2016) Heng Li BIOINFORMATICS
- Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks
- (2016) Hosein Mohimani et al. NATURAL PRODUCT REPORTS
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- Linear-time superbubble identification algorithm for genome assembly
- (2016) Ljiljana Brankovic et al. THEORETICAL COMPUTER SCIENCE
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
- (2015) Ryan R. Wick et al. BIOINFORMATICS
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- A new antibiotic kills pathogens without detectable resistance
- (2015) Losee L. Ling et al. NATURE
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold
- (2013) J. F. Nijkamp et al. BIOINFORMATICS
- Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
- (2013) Sergey Nurk et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Bambus 2: scaffolding metagenomes
- (2011) Sergey Koren et al. BIOINFORMATICS
- A mass spectrometry–guided genome mining approach for natural product peptidogenomics
- (2011) Roland D Kersten et al. Nature Chemical Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
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