Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data
出版年份 2019 全文链接
标题
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data
作者
关键词
Microbiome, Long-read sequencing, Microbial genomics, Sequence assembly, Frame-shifts, Algorithms, Software
出版物
Microbiome
Volume 7, Issue 1, Pages -
出版商
Springer Nature
发表日期
2019-04-16
DOI
10.1186/s40168-019-0665-y
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs
- (2018) Daniel H. Huson et al. Biology Direct
- Fast and accurate de novo genome assembly from long uncorrected reads
- (2017) Robert Vaser et al. GENOME RESEARCH
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- Shotgun metagenomics, from sampling to analysis
- (2017) Christopher Quince et al. NATURE BIOTECHNOLOGY
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system
- (2016) Daan R. Speth et al. Nature Communications
- MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
- (2016) Daniel H. Huson et al. PLoS Computational Biology
- Antibiotic Selection Pressure Determination through Sequence-Based Metagenomics
- (2015) Matthias Willmann et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
- (2015) Ryan R. Wick et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data
- (2015) Johan Bengtsson-Palme et al. Molecular Ecology Resources
- MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
- (2015) Dongwan D. Kang et al. PeerJ
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Expanding our view of genomic diversity inCandidatus Accumulibacter clades
- (2014) Connor T. Skennerton et al. ENVIRONMENTAL MICROBIOLOGY
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Low Acetate Concentrations Favor Polyphosphate-Accumulating Organisms over Glycogen-Accumulating Organisms in Enhanced Biological Phosphorus Removal from Wastewater
- (2013) Yunjie Tu et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Adaptive seeds tame genomic sequence comparison
- (2011) S. M. Kielbasa et al. GENOME RESEARCH
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started