Environmental DNA: What's behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring

Uncovering the complete biodiversity structure in spatial networks: the example of riverine systems

(2020) Florian Altermatt et al.   OIKOS

Environmental DNA reveals seasonal shifts and potential interactions in a marine community

(2020) Anni Djurhuus et al.   Nature Communications

Space invaders: Searching for invasive Smallmouth Bass ( Micropterus dolomieu ) in a renowned Atlantic Salmon ( Salmo salar ) river

(2020) Antóin M. O'Sullivan et al.   Ecology and Evolution

Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems

(2020) Luca Carraro et al.   Nature Communications

Multiple threats imperil freshwater biodiversity in the Anthropocene

(2019) David Dudgeon   CURRENT BIOLOGY

Environmental DNA is not the tool by itself

(2019) Anaïs Lacoursière‐Roussel et al.   JOURNAL OF FISH BIOLOGY

Environmental DNA size sorting and degradation experiment indicates the state of Daphnia magna mitochondrial and nuclear eDNA is subcellular

(2019) Rashnat Moushomi et al.   Scientific Reports

Holistic pelagic biodiversity monitoring of the Black Sea via eDNA metabarcoding approach: From bacteria to marine mammals

(2019) Yan Zhang et al.   ENVIRONMENT INTERNATIONAL

Metabarcoding and post-sampling strategies to discover non-indigenous species: A case study in the estuaries of the central south Bay of Biscay

(2018) Yaisel J. Borrell et al.   JOURNAL FOR NATURE CONSERVATION

Environmental DNA metabarcoding of benthic bacterial communities indicates the benthic footprint of salmon aquaculture

(2018) Thorsten Stoeck et al.   MARINE POLLUTION BULLETIN

Supervised machine learning outperforms taxonomy-based environmental DNA metabarcoding applied to biomonitoring

(2018) Tristan Cordier et al.   Molecular Ecology Resources

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

(2018) Jan Pawlowski et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems

(2018) C. Corinaldesi et al.   Scientific Reports

Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers

(2018) Jan-Niklas Macher et al.   Molecular Ecology Resources

Emerging threats and persistent conservation challenges for freshwater biodiversity

(2018) Andrea J. Reid et al.   BIOLOGICAL REVIEWS

Environmental DNA Time Series in Ecology

(2018) Miklós Bálint et al.   TRENDS IN ECOLOGY & EVOLUTION

Embracing Environmental Genomics and Machine Learning for Routine Biomonitoring

(2018) Tristan Cordier et al.   TRENDS IN MICROBIOLOGY

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment

(2017) Michael Stat et al.   Scientific Reports

Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea

(2016) John K. Pearman et al.   Marine Genomics

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

(2016) Kristy Deiner et al.   Nature Communications

Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA

(2015) Kristy Deiner et al.   BIOLOGICAL CONSERVATION

Moving environmental DNA methods from concept to practice for monitoring aquatic macroorganisms

(2015) Caren S. Goldberg et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Deep-Sea, Deep-Sequencing: Metabarcoding Extracellular DNA from Sediments of Marine Canyons

(2015) Magdalena Guardiola et al.   PLoS One

Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)

(2014) Amrita Srivathsan et al.   Molecular Ecology Resources

Harnessing DNA to improve environmental management

(2014) R. P. Kelly et al.   SCIENCE

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Particle size distribution and optimal capture of aqueous macrobial eDNA

(2014) Cameron R. Turner et al.   Methods in Ecology and Evolution

Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species

(2014) Elvira Mächler et al.   Freshwater Science

The future of environmental DNA in ecology

(2012) NIGEL G. YOCCOZ   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY

An update onPseudomonas aeruginosabiofilm formation, tolerance, and dispersal

(2010) Morten Harmsen et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Assessing Macroinvertebrate Biodiversity in Freshwater Ecosystems: Advances and Challenges in DNA-based Approaches

(2010) Michael E. Pfrender et al.   QUARTERLY REVIEW OF BIOLOGY

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters