LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature Fusion

lncRNA OGFRP1 functions as a ceRNA to promote the progression of prostate cancer by regulating SARM1 level via miR-124-3p

(2020) Keqiang Yan et al.   Aging-US

Cluster correlation based method for lncRNA-disease association prediction

(2020) Qianqian Yuan et al.   BMC BIOINFORMATICS

LncRNA SNHG1 promotes EMT process in gastric cancer cells through regulation of the miR-15b/DCLK1/Notch1 axis

(2020) Zhi-Qi Liu et al.   BMC GASTROENTEROLOGY

Clinical, Molecular, Functional, and Structural Characterization of CYP17A1 Mutations in Brazilian Patients with 17-Hydroxylase Deficiency

(2020) Fernanda Borchers Coeli-Lacchini et al.   HORMONE AND METABOLIC RESEARCH

Developing Computational Model to Predict Protein-Protein Interaction Sites Based on the XGBoost Algorithm

(2020) Aijun Deng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

SDLDA: lncRNA-disease association prediction based on singular value decomposition and deep learning

(2020) Min Zeng et al.   METHODS

Identification of an Immune-Related Nine-lncRNA Signature Predictive of Overall Survival in Colon Cancer

(2020) Yilin Lin et al.   Frontiers in Genetics

Mitochondrial ncRNA targeting induces cell cycle arrest and tumor growth inhibition of MDA-MB-231 breast cancer cells through reduction of key cell cycle progression factors

(2019) Christopher Fitzpatrick et al.   Cell Death & Disease

Exenatide promotes cardiac lncRNAs HOX transcript antisense RNA (HOTAIR) in Wistar rats with liver cirrhosis; a novel role of GLP-1 receptor agonists in cirrhotic cardiomyopathy

(2019) Omnyah A. El-kharashi et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Analysis of transcription factor- and ncRNA-mediated potential pathogenic gene modules in Alzheimer’s disease

(2019) Cuihua Zou et al.   Aging-US

LncRNA terminal differentiation-induced ncRNA (TINCR) sponges miR-302 to upregulate cyclin D1 in cervical squamous cell carcinoma (CSCC)

(2019) Anli Hou et al.   Human Cell

Acquisition of functional neurons by direct conversion: Switching the developmental clock directly

(2019) Shuangquan Chen et al.   Journal of Genetics and Genomics

Physical and Functional Constraints on Viable Belowground Acquisition Strategies

(2019) M. Luke McCormack et al.   Frontiers in Plant Science

LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning

(2018) Cheng Yang et al.   BIOINFORMATICS

The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifier

(2018) Zhen Cao et al.   BIOINFORMATICS

iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC

(2018) Zhen-Dong Su et al.   BIOINFORMATICS

OUP accepted manuscript

(2018)   BRIEFINGS IN BIOINFORMATICS

SVM-RFE: selection and visualization of the most relevant features through non-linear kernels

(2018) Hector Sanz et al.   BMC BIOINFORMATICS

A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth

(2017) Jin-Zhou Huang et al.   MOLECULAR CELL

LncATLAS database for subcellular localization of long noncoding RNAs

(2017) David Mas-Ponte et al.   RNA

Sequence-based predictive modeling to identify cancerlectins

(2017) Hong-Yan Lai et al.   Oncotarget

Predicting the Organelle Location of Noncoding RNAs Using Pseudo Nucleotide Compositions

(2016) Pengmian Feng et al.   Interdisciplinary Sciences-Computational Life Sciences

Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition

(2015) Pan-Pan Zhu et al.   Molecular BioSystems

Pseudo nucleotide composition or PseKNC: an effective formulation for analyzing genomic sequences

(2015) Wei Chen et al.   Molecular BioSystems

PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

A novel approach to represent and compare RNA secondary structures

(2014) Eugenio Mattei et al.   NUCLEIC ACIDS RESEARCH

Occam's Razor in sensorimotor learning

(2014) T. Genewein et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

SVM-RFE Based Feature Selection and Taguchi Parameters Optimization for Multiclass SVM Classifier

(2014) Mei-Ling Huang et al.   TheScientificWorldJOURNAL

Structure learning and the Occam's razor principle: a new view of human function acquisition

(2014) Devika Narain et al.   Frontiers in Computational Neuroscience

Gene prediction in metagenomic fragments based on the SVM algorithm

(2013) Yongchu Liu et al.   BMC BIOINFORMATICS

Robust k -mer frequency estimation using gapped k -mers

(2013) Mahmoud Ghandi et al.   JOURNAL OF MATHEMATICAL BIOLOGY

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Characterization and evolution of 5′ and 3′ untranslated regions in eukaryotes

(2012) Honglei Liu et al.   GENE

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Kinetic models of the interference of gene transcription to ncRNA and mRNA

(2011) Vladimir P. Zhdanov   CHAOS