Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
出版年份 2015 全文链接
标题
Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
作者
关键词
Low input, Low biomass, Metagenome, Library preparation protocol, Microbiome
出版物
BMC GENOMICS
Volume 16, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-10-25
DOI
10.1186/s12864-015-2063-6
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The effects of variable sample biomass on comparative metagenomics
- (2015) Meghan Chafee et al. ENVIRONMENTAL MICROBIOLOGY
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods
- (2014) Charles F. A. de Bourcy et al. PLoS One
- Diverse and Widespread Contamination Evident in the Unmapped Depths of High Throughput Sequencing Data
- (2014) Richard W. Lusk PLoS One
- Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
- (2014) Matthew Scholz et al. Scientific Reports
- FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
- (2014) Genivaldo Gueiros Z. Silva et al. PeerJ
- Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome
- (2014) Rachel Marine et al. Microbiome
- Sequencing platform and library preparation choices impact viral metagenomes
- (2013) Sergei A Solonenko et al. BMC GENOMICS
- Seasonal Variability in Bacterial and Fungal Diversity of the Near-Surface Atmosphere
- (2013) Robert M. Bowers et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Marine viruses, a genetic reservoir revealed by targeted viromics
- (2013) Joaquín Martínez Martínez et al. ISME Journal
- Studying the microbiology of the indoor environment
- (2013) Scott T Kelley et al. GENOME BIOLOGY
- Comparison of metagenomic samples using sequence signatures
- (2012) Bai Jiang et al. BMC GENOMICS
- Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
- (2012) Melissa B. Duhaime et al. ENVIRONMENTAL MICROBIOLOGY
- Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank
- (2012) Sean P Jungbluth et al. ISME Journal
- MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
- (2012) Toshiaki Namiki et al. NUCLEIC ACIDS RESEARCH
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- Deep Sequencing Analyses of Low Density Microbial Communities: Working at the Boundary of Accurate Microbiota Detection
- (2012) Giske Biesbroek et al. PLoS One
- Genome-Wide Detection of Single-Nucleotide and Copy-Number Variations of a Single Human Cell
- (2012) C. Zong et al. SCIENCE
- Ray Meta: scalable de novo metagenome assembly and profiling
- (2012) Sébastien Boisvert et al. GENOME BIOLOGY
- Evaluation of a Transposase Protocol for Rapid Generation of Shotgun High-Throughput Sequencing Libraries from Nanogram Quantities of DNA
- (2011) Rachel Marine et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Meta-IDBA: a de Novo assembler for metagenomic data
- (2011) Y. Peng et al. BIOINFORMATICS
- Linear amplification for deep sequencing
- (2011) Wieteke A M Hoeijmakers et al. Nature Protocols
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
- (2011) André E Minoche et al. GENOME BIOLOGY
- Multiple displacement amplification compromises quantitative analysis of metagenomes
- (2010) Suzan Yilmaz et al. NATURE METHODS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Biodiversity and biogeography of the atmosphere
- (2010) A. M. Womack et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
- (2010) Andrew Adey et al. GENOME BIOLOGY
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
- (2009) Iwanka Kozarewa et al. NATURE METHODS
- Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
- (2008) D. Chivian et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started