标题
The effects of variable sample biomass on comparative metagenomics
作者
关键词
-
出版物
ENVIRONMENTAL MICROBIOLOGY
Volume 17, Issue 7, Pages 2239-2253
出版商
Wiley
发表日期
2014-10-20
DOI
10.1111/1462-2920.12668
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Bias from removing read duplication in ultra-deep sequencing experiments
- (2014) Wanding Zhou et al. BIOINFORMATICS
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
- (2014) H Bjørn Nielsen et al. NATURE BIOTECHNOLOGY
- Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities
- (2014) L. Maignien et al. mBio
- Sequencing platform and library preparation choices impact viral metagenomes
- (2013) Sergei A Solonenko et al. BMC GENOMICS
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- Reference-independent comparative metagenomics using cross-assembly: crAss
- (2012) Bas E. Dutilh et al. BIOINFORMATICS
- A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
- (2012) M.-A. Dillies et al. BRIEFINGS IN BIOINFORMATICS
- Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
- (2012) Melissa B. Duhaime et al. ENVIRONMENTAL MICROBIOLOGY
- Structure, fluctuation and magnitude of a natural grassland soil metagenome
- (2012) Tom O Delmont et al. ISME Journal
- Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides
- (2012) S. D. Brown et al. JOURNAL OF BACTERIOLOGY
- MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
- (2012) Toshiaki Namiki et al. NUCLEIC ACIDS RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Deep Sequencing Analyses of Low Density Microbial Communities: Working at the Boundary of Accurate Microbiota Detection
- (2012) Giske Biesbroek et al. PLoS One
- Global distribution of microbial abundance and biomass in subseafloor sediment
- (2012) J. Kallmeyer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
- (2012) N. Fierer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Preparation of high-quality next-generation sequencing libraries from picogram quantities of target DNA
- (2011) N. J. Parkinson et al. GENOME RESEARCH
- PhymmBL expanded: confidence scores, custom databases, parallelization and more
- (2011) Arthur Brady et al. NATURE METHODS
- Linear amplification for deep sequencing
- (2011) Wieteke A M Hoeijmakers et al. Nature Protocols
- Variability and Diversity of Nasopharyngeal Microbiota in Children: A Metagenomic Analysis
- (2011) Debby Bogaert et al. PLoS One
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
- (2011) André E Minoche et al. GENOME BIOLOGY
- Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon
- (2010) Yunwei Wang et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments
- (2010) Robert M Bowers et al. ISME Journal
- The functional potential of high Arctic permafrost revealed by metagenomic sequencing, qPCR and microarray analyses
- (2010) Etienne Yergeau et al. ISME Journal
- Multiple displacement amplification compromises quantitative analysis of metagenomes
- (2010) Suzan Yilmaz et al. NATURE METHODS
- Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
- (2010) Andrew Adey et al. GENOME BIOLOGY
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- Systematic artifacts in metagenomes from complex microbial communities
- (2009) Vicente Gomez-Alvarez et al. ISME Journal
- Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
- (2009) Iwanka Kozarewa et al. NATURE METHODS
- Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models
- (2009) Arthur Brady et al. NATURE METHODS
- Topographical and Temporal Diversity of the Human Skin Microbiome
- (2009) E. A. Grice et al. SCIENCE
- Community-wide analysis of microbial genome sequence signatures
- (2009) Gregory J Dick et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
- (2008) Susan M. Huse et al. PLoS Genetics
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