标题
Sequencing platform and library preparation choices impact viral metagenomes
作者
关键词
Library Preparation, Sequencing Platform, Protein Cluster, Fosmid Library, Deep Chlorophyll Maximum
出版物
BMC GENOMICS
Volume 14, Issue 1, Pages 320
出版商
Springer Nature
发表日期
2013-05-11
DOI
10.1186/1471-2164-14-320
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
- (2012) Samuel O Oyola et al. BMC GENOMICS
- Ultrafast clustering algorithms for metagenomic sequence analysis
- (2012) W. Li et al. BRIEFINGS IN BIOINFORMATICS
- Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
- (2012) Melissa B. Duhaime et al. ENVIRONMENTAL MICROBIOLOGY
- Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis
- (2012) Thomas Danhorn et al. ISME Journal
- Performance comparison of benchtop high-throughput sequencing platforms
- (2012) Nicholas J Loman et al. NATURE BIOTECHNOLOGY
- Unlocking the potential of metagenomics through replicated experimental design
- (2012) Rob Knight et al. NATURE BIOTECHNOLOGY
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- Nanopores: A journey towards DNA sequencing
- (2012) Meni Wanunu Physics of Life Reviews
- Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
- (2012) Chengwei Luo et al. PLoS One
- Population Genomics of Early Events in the Ecological Differentiation of Bacteria
- (2012) B. J. Shapiro et al. SCIENCE
- Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline
- (2012) Melissa B. Duhaime et al. VIROLOGY
- Artificial duplicate reads in sequencing data of 454 Genome Sequencer FLX System
- (2011) H. Dong et al. ACTA BIOCHIMICA ET BIOPHYSICA SINICA
- Evaluation of a Transposase Protocol for Rapid Generation of Shotgun High-Throughput Sequencing Libraries from Nanogram Quantities of DNA
- (2011) Rachel Marine et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
- (2011) Kyoung-Ho Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metavir: a web server dedicated to virome analysis
- (2011) Simon Roux et al. BIOINFORMATICS
- Individual genome assembly from complex community short-read metagenomic datasets
- (2011) Chengwei Luo et al. ISME Journal
- Sequencing of high G+C microbial genomes using the ultrafast pyrosequencing technology
- (2011) Patrick Schwientek et al. JOURNAL OF BIOTECHNOLOGY
- Field guide to next-generation DNA sequencers
- (2011) TRAVIS C. GLENN Molecular Ecology Resources
- An integrated semiconductor device enabling non-optical genome sequencing
- (2011) Jonathan M. Rothberg et al. NATURE
- Linear amplification for deep sequencing
- (2011) Wieteke A M Hoeijmakers et al. Nature Protocols
- Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR
- (2011) A. D. Tadmor et al. SCIENCE
- A Holistic Approach to Marine Eco-Systems Biology
- (2011) Eric Karsenti et al. PLOS BIOLOGY
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
- (2011) André E Minoche et al. GENOME BIOLOGY
- Artificial and natural duplicates in pyrosequencing reads of metagenomic data
- (2010) Beifang Niu et al. BMC BIOINFORMATICS
- Recent advances in DNA sequencing methods – general principles of sample preparation
- (2010) Sten Linnarsson EXPERIMENTAL CELL RESEARCH
- A global network of coexisting microbes from environmental and whole-genome sequence data
- (2010) S. Chaffron et al. GENOME RESEARCH
- Multiple displacement amplification compromises quantitative analysis of metagenomes
- (2010) Suzan Yilmaz et al. NATURE METHODS
- A simple and efficient method for concentration of ocean viruses by chemical flocculation
- (2010) Seth G. John et al. Environmental Microbiology Reports
- Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
- (2010) Andrew Adey et al. GENOME BIOLOGY
- Systematic artifacts in metagenomes from complex microbial communities
- (2009) Vicente Gomez-Alvarez et al. ISME Journal
- Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
- (2009) Iwanka Kozarewa et al. NATURE METHODS
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
- (2009) Peter J. A. Cock et al. NUCLEIC ACIDS RESEARCH
- Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler
- (2009) Daniel R. Zerbino et al. PLoS One
- New dimensions of the virus world discovered through metagenomics
- (2009) David M. Kristensen et al. TRENDS IN MICROBIOLOGY
- Metagenomics: Read Length Matters
- (2008) K. E. Wommack et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A large genome center's improvements to the Illumina sequencing system
- (2008) Michael A Quail et al. NATURE METHODS
- Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
- (2008) J. C. Dohm et al. NUCLEIC ACIDS RESEARCH
- Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
- (2008) Susan M. Huse et al. PLoS Genetics
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