Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

Bridgehead invasion of a monomorphic plant pathogenic bacterium:Xanthomonas citripv. citri, an emerging citrus pathogen in Mali and Burkina Faso

(2015) A. Leduc et al.   ENVIRONMENTAL MICROBIOLOGY

Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas

(2015) Yunzeng Zhang et al.   ISME Journal

A functional XopAG homologue inXanthomonas fuscanspv.aurantifoliistrain C limits host range

(2015) A. M. Gochez et al.   PLANT PATHOLOGY

A MLVA Genotyping Scheme for Global Surveillance of the Citrus Pathogen Xanthomonas citri pv. citri Suggests a Worldwide Geographical Expansion of a Single Genetic Lineage

(2014) Olivier Pruvost et al.   PLoS One

Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range

(2013) Neha Jalan et al.   BMC GENOMICS

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

(2013) Armelle Darrasse et al.   BMC GENOMICS

Identification and characterization of biofilm formation-defective mutants of Xanthomonas citri subsp. citri

(2013) F. Malamud et al.   MICROBIOLOGY-SGM

Variations in type III effector repertoires, pathological phenotypes and host range ofXanthomonas citripv.citripathotypes

(2013) Aline Escalon et al.   MOLECULAR PLANT PATHOLOGY

Atypical Regulation of Virulence-Associated Functions by a Diffusible Signal Factor in Xanthomonas oryzae pv. oryzae

(2012) Rikky Rai et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A Pilot Study of Bacterial Genes with Disrupted ORFs Reveals a Surprising Profusion of Protein Sequence Recoding Mediated by Ribosomal Frameshifting and Transcriptional Realignment

(2011) V. Sharma et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-Throughput Screening and Analysis of Genes ofXanthomonas citrisubsp.citriInvolved in Citrus Canker Symptom Development

(2011) Qing Yan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Structure-Function Analysis of the HrpB2-HrcU Interaction in the Xanthomonas citri Type III Secretion System

(2011) Paola A. Cappelletti et al.   PLoS One

Genome-Wide Mutagenesis of Xanthomonas axonopodis pv. citri Reveals Novel Genetic Determinants and Regulation Mechanisms of Biofilm Formation

(2011) Jinyun Li et al.   PLoS One

Virulence determinants, drug resistance and mobile genetic elements of Laribacter hongkongensis: a genome-wide analysis

(2011) Susanna KP Lau et al.   Cell and Bioscience

Computational and Biochemical Analysis of the Xanthomonas Effector AvrBs2 and Its Role in the Modulation of Xanthomonas Type Three Effector Delivery

(2011) Bingyu Zhao et al.   PLoS Pathogens

Mugsy: fast multiple alignment of closely related whole genomes

(2010) Samuel V. Angiuoli et al.   BIOINFORMATICS

Secretion of early and late substrates of the type III secretion system from Xanthomonas is controlled by HpaC and the C-terminal domain of HrcU

(2010) Christian Lorenz et al.   MOLECULAR MICROBIOLOGY

The Monofunctional Catalase KatE of Xanthomonas axonopodis pv. citri Is Required for Full Virulence in Citrus Plants

(2010) María Laura Tondo et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of Xanthomonas citri pv. citri and Xanthomonas campestris pv. bilvae

(2009) L. Bui Thi Ngoc et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The xrvA gene of Xanthomonas oryzae pv. oryzae, encoding an H-NS-like protein, regulates virulence in rice

(2009) J.-X. Feng et al.   MICROBIOLOGY-SGM

Identification ofXanthomonas citrissp.citrihost specificity genes in a heterologous expression host

(2009) MYRIAN RYBAK et al.   MOLECULAR PLANT PATHOLOGY

The type III effectors ofXanthomonas

(2009) FRANK F. WHITE et al.   MOLECULAR PLANT PATHOLOGY

Type III Protein Secretion in Plant Pathogenic Bacteria

(2009) D. Buttner et al.   PLANT PHYSIOLOGY

The Origins of Plant Pathogens in Agro-Ecosystems

(2008) Eva H. Stukenbrock et al.   Annual Review of Phytopathology

Characterization of the RND-Type Multidrug Efflux Pump MexAB-OprM of the Plant Pathogen Pseudomonas syringae

(2008) S. O. Stoitsova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

From Local Surveys to Global Surveillance: Three High-Throughput Genotyping Methods for Epidemiological Monitoring of Xanthomonas citri pv. citri Pathotypes

(2008) L. Bui Thi Ngoc et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Multiple Adhesin-Like Functions ofXanthomonas oryzaepv.oryzaeAre Involved in Promoting Leaf Attachment, Entry, and Virulence on Rice

(2008) Amit Das et al.   MOLECULAR PLANT-MICROBE INTERACTIONS