Comparative Analysis of the Core Proteomes among the Pseudomonas Major Evolutionary Groups Reveals Species-Specific Adaptations for Pseudomonas aeruginosa and Pseudomonas chlororaphis

Genomics in Bacterial Taxonomy: Impact on the Genus Pseudomonas

(2020) Jorge Lalucat et al.   Genes

Defining the core essential genome of Pseudomonas aeruginosa

(2019) Bradley E. Poulsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Repurposed Antimicrobial Combination Therapy: Tobramycin-Ciprofloxacin Hybrid Augments Activity of the Anticancer Drug Mitomycin C Against Multidrug-Resistant Gram-Negative Bacteria

(2019) Ronald Domalaon et al.   Frontiers in Microbiology

Not all Pseudomonas aeruginosa are equal: strains from industrial sources possess uniquely large multireplicon genomes

(2019) Rebecca Weiser et al.   Microbial Genomics

Genome-based evolutionary history of Pseudomonas spp

(2018) Cedar Hesse et al.   ENVIRONMENTAL MICROBIOLOGY

The current status on the taxonomy of Pseudomonas revisited: An update

(2018) Alvaro Peix et al.   INFECTION GENETICS AND EVOLUTION

Pseudomonas syringae: what it takes to be a pathogen

(2018) Xiu-Fang Xin et al.   NATURE REVIEWS MICROBIOLOGY

Safety of Pseudomonas chlororaphis as a gene source for genetically modified crops

(2018) Jennifer A. Anderson et al.   TRANSGENIC RESEARCH

Metabolic and Evolutionary Insights in the Transformation of Diphenylamine by a Pseudomonas putida Strain Unravelled by Genomic, Proteomic, and Transcription Analysis

(2018) Evangelia S. Papadopoulou et al.   Frontiers in Microbiology

Pseudomonas chlororaphis Produces Multiple R-Tailocin Particles That Broaden the Killing Spectrum and Contribute to Persistence in Rhizosphere Communities

(2018) Robert J. Dorosky et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Comparative genomics of clinical strains of Pseudomonas aeruginosa strains isolated from different geographic sites

(2018) Dinesh Subedi et al.   Scientific Reports

The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity

(2018) Luca Freschi et al.   Genome Biology and Evolution

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex

(2017) E. Joel Loveridge et al.   JOURNAL OF BACTERIOLOGY

Pseudomonas aeruginosa Lifestyle: A Paradigm for Adaptation, Survival, and Persistence

(2017) M. Fata Moradali et al.   Frontiers in Cellular and Infection Microbiology

Genetic Diversity of Nitrogen-Fixing and Plant Growth Promoting Pseudomonas Species Isolated from Sugarcane Rhizosphere

(2017) Hai-Bi Li et al.   Frontiers in Microbiology

Only Acyl Carrier Protein 1 (AcpP1) Functions in Pseudomonas aeruginosa Fatty Acid Synthesis

(2017) Jin-Cheng Ma et al.   Frontiers in Microbiology

Classification of Isolates from the Pseudomonas fluorescens Complex into Phylogenomic Groups Based in Group-Specific Markers

(2017) Daniel Garrido-Sanz et al.   Frontiers in Microbiology

In-silico Taxonomic Classification of 373 Genomes Reveals Species Misidentification and New Genospecies within the Genus Pseudomonas

(2017) Phuong N. Tran et al.   Frontiers in Microbiology

Pseudomonas aeruginosa zinc uptake in chelating environment is primarily mediated by the metallophore pseudopaline

(2017) Sébastien Lhospice et al.   Scientific Reports

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

Discovery Strategies of Bioactive Compounds Synthesized by Nonribosomal Peptide Synthetases and Type-I Polyketide Synthases Derived from Marine Microbiomes

(2016) Grigoris Amoutzias et al.   Marine Drugs

Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus

(2016) G. Ghssein et al.   SCIENCE

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

(2016) Jasper J. Koehorst et al.   Scientific Reports

Pseudomonas aeruginosa Exhibits Deficient Biofilm Formation in the Absence of Class II and III Ribonucleotide Reductases Due to Hindered Anaerobic Growth

(2016) Anna Crespo et al.   Frontiers in Microbiology

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

(2015) Se-Ran Jun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ten years of pan-genome analyses

(2015) George Vernikos et al.   CURRENT OPINION IN MICROBIOLOGY

Analysis of the core genome and pangenome of P seudomonas putida

(2015) Zulema Udaondo et al.   ENVIRONMENTAL MICROBIOLOGY

Cell wall stress activates expression of a novel stress response facilitator (SrfA) under σ22 (AlgT/U) control in Pseudomonas aeruginosa

(2015) Lynn F. Wood et al.   MICROBIOLOGY-SGM

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Essential genome ofPseudomonas aeruginosain cystic fibrosis sputum

(2015) Keith H. Turner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

General and condition-specific essential functions ofPseudomonas aeruginosa

(2015) Samuel A. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains

(2015) William B Whitman et al.   Standards in Genomic Sciences

Phylogenomics and systematics in Pseudomonas

(2015) Margarita Gomila et al.   Frontiers in Microbiology

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

(2015) Luca Freschi et al.   Frontiers in Microbiology

What It Takes to Be a Pseudomonas aeruginosa? The Core Genome of the Opportunistic Pathogen Updated

(2015) Benoît Valot et al.   PLoS One

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

(2014) Egon A Ozer et al.   BMC GENOMICS

Microbiology, Genomics, and Clinical Significance of the Pseudomonas fluorescens Species Complex, an Unappreciated Colonizer of Humans

(2014) Brittan S. Scales et al.   CLINICAL MICROBIOLOGY REVIEWS

EsrC, an envelope stress-regulated repressor of themexCD-oprJmultidrug efflux operon inPseudomonas aeruginosa

(2014) Andrew Purssell et al.   ENVIRONMENTAL MICROBIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

A Reference Pan-Genome Approach to Comparative Bacterial Genomics: Identification of Novel Epidemiological Markers in Pathogenic Campylobacter

(2014) Guillaume Méric et al.   PLoS One

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

(2014) Nikos C. Kyrpides et al.   PLOS BIOLOGY

Expression of mucoid induction factor MucE is dependent upon the alternate sigma factor AlgU in Pseudomonas aeruginosa

(2013) Yeshi Yin et al.   BMC MICROBIOLOGY

A Comprehensive Analysis of In Vitro and In Vivo Genetic Fitness of Pseudomonas aeruginosa Using High-Throughput Sequencing of Transposon Libraries

(2013) David Skurnik et al.   PLoS Pathogens

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

(2012) K. A. Jolley et al.   MICROBIOLOGY-SGM

Defining the Pseudomonas Genus: Where Do We Draw the Line with Azotobacter?

(2011) Asli I. Özen et al.   MICROBIAL ECOLOGY

Type VI secretion delivers bacteriolytic effectors to target cells

(2011) Alistair B. Russell et al.   NATURE

PseudoMLSA: a database for multigenic sequence analysis of Pseudomonas species

(2010) Antoni Bennasar et al.   BMC MICROBIOLOGY

A Type VI Secretion System of Pseudomonas aeruginosa Targets a Toxin to Bacteria

(2010) Rachel D. Hood et al.   Cell Host & Microbe

DNA sequence-based analysis of thePseudomonasspecies

(2010) Magdalena Mulet et al.   ENVIRONMENTAL MICROBIOLOGY

Notes on the characterization of prokaryote strains for taxonomic purposes

(2009) B. J. Tindall et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

(2009) Mark W Silby et al.   GENOME BIOLOGY

Evolution and taxonomic distribution of nonribosomal peptide and polyketide synthases

(2008) Grigoris D Amoutzias et al.   Future Microbiology

Role of siderophores in cystic fibrosis pathogenesis: Foes or friends?

(2008) D MOSSIALOS et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

(2008) D. A. Rasko et al.   JOURNAL OF BACTERIOLOGY