Bacteriomic Profiling of Branchial Lesions Induced by Neoparamoeba perurans Challenge Reveals Commensal Dysbiosis and an Association with Tenacibaculum dicentrarchi in AGD-Affected Atlantic Salmon (Salmo salar L.)

Amoebic gill disease and host response in Atlantic salmon ( Salmo salar L.): A review

(2020) Mar Marcos‐López et al.   PARASITE IMMUNOLOGY

A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome

(2019) Thibault P.R.A. Legrand et al.   Reviews in Aquaculture

First identification in Tasmania of fish pathogens Tenacibaculum dicentrarchi and T. soleae and multiplex PCR for these organisms and T. maritimum

(2019) TK Wilson et al.   DISEASES OF AQUATIC ORGANISMS

The interaction between temperature and dose on the efficacy and biochemical response of Atlantic salmon to hydrogen peroxide treatment for amoebic gill disease

(2019) James W. Wynne et al.   JOURNAL OF FISH DISEASES

Histopathological investigation of complex gill disease in sea farmed Atlantic salmon

(2019) Mona C. Gjessing et al.   PLoS One

Induction of tenacibaculosis in Atlantic salmon smolts using Tenacibaculum finnmarkense and the evaluation of a whole cell inactivated vaccine

(2018) Sverre Bang Småge et al.   AQUACULTURE

Investigation of co-infections with pathogens associated with gill disease in Atlantic salmon during an amoebic gill disease outbreak

(2018) J K Downes et al.   JOURNAL OF FISH DISEASES

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Complex Gill Disease: an Emerging Syndrome in Farmed Atlantic Salmon (Salmo salar L.)

(2018) A. Herrero et al.   JOURNAL OF COMPARATIVE PATHOLOGY

In vitro gill cell monolayer successfully reproduces in vivo Atlantic salmon host responses to Neoparamoeba perurans infection

(2018) Irene Cano et al.   FISH & SHELLFISH IMMUNOLOGY

A diversity of amoebae colonise the gills of farmed Atlantic salmon (Salmo salar) with amoebic gill disease (AGD)

(2018) Chloe J. English et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Genotyping of Tenacibaculum maritimum isolates from farmed Atlantic salmon in Western Canada

(2017) K Frisch et al.   JOURNAL OF FISH DISEASES

The Skin-Mucus Microbial Community of Farmed Atlantic Salmon (Salmo salar)

(2017) Giusi Minniti et al.   Frontiers in Microbiology

The gill parasite Paramoeba perurans compromises aerobic scope, swimming capacity and ion balance in Atlantic salmon

(2017) Malthe Hvas et al.   Conservation Physiology

Salmonid alphavirus infection causes skin dysbiosis in Atlantic salmon (Salmo salar L.) post-smolts

(2017) Kristin M. Reid et al.   PLoS One

Parasitism perturbs the mucosal microbiome of Atlantic Salmon

(2017) M. S. Llewellyn et al.   Scientific Reports

First isolation, identification and characterisation of Tenacibaculum maritimum in Norway, isolated from diseased farmed sea lice cleaner fish Cyclopterus lumpus L

(2016) Sverre Bang Småge et al.   AQUACULTURE

Immune gene expression in the gills of Atlantic salmon ( Salmo salar L.) following experimental reinfection with Neoparamoeba perurans

(2016) Ylenia Pennacchi et al.   AQUACULTURE

Morphological diversity ofParamoeba peruranstrophozoites and their interaction with Atlantic salmon,Salmo salarL., gills

(2016) J Wiik-Nielsen et al.   JOURNAL OF FISH DISEASES

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Isolation, Characterization and Virulence Potential ofTenacibaculum dicentrarchiin Salmonid Cultures in Chile

(2016) R. Avendaño-Herrera et al.   Transboundary and Emerging Diseases

Branchial nitrogen cycle symbionts can remove ammonia in fish gills

(2016) Maartje A.H.J. van Kessel et al.   Environmental Microbiology Reports

Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon

(2016) Jep Lokesh et al.   Scientific Reports

Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis

(2016) Tongtong Li et al.   Scientific Reports

Neoparamoeba perurans loses virulence during clonal culture

(2015) Andrew R. Bridle et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

A longitudinal study of amoebic gill disease on a marine Atlantic salmon farm utilising a real-time PCR assay for the detection of Neoparamoeba perurans

(2015) JK Downes et al.   Aquaculture Environment Interactions

Evidence of immune and inflammatory processes in the gills of AGD-affected Atlantic salmon, Salmo salar L.

(2014) Y. Pennacchi et al.   FISH & SHELLFISH IMMUNOLOGY

Amoebae as a tool to isolate new bacterial species, to discover new virulence factors and to study the host–pathogen interactions

(2014) Nicolo Tosetti et al.   MICROBIAL PATHOGENESIS

Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries

(2014) Martin S. Llewellyn et al.   Frontiers in Microbiology

Intestinal bacterial community structure differs between healthy and inflamed intestines in Atlantic salmon (Salmo salar L.)

(2013) Felipe E. Reveco et al.   AQUACULTURE

Probiotic treatment by indigenous bacteria decreases mortality without disturbing the natural microbiota of Salvelinus fontinalis

(2013) Sébastien Boutin et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Bacterial Discrimination by Dictyostelid Amoebae Reveals the Complexity of Ancient Interspecies Interactions

(2013) Waleed Nasser et al.   CURRENT BIOLOGY

Immunity to Amoeba

(2013) Barbara Nowak et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

In vitro cultured Neoparamoeba perurans causes amoebic gill disease in Atlantic salmon and fulfils Koch’s postulates

(2012) P.B.B. Crosbie et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Development of a quantitative real-time PCR for the detection of Tenacibaculum maritimum and its application to field samples

(2012) E Fringuelli et al.   JOURNAL OF FISH DISEASES

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Jellyfish as Vectors of Bacterial Disease for Farmed Salmon (Salmo Salar)

(2011) Hugh W. Ferguson et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Gill observations in Atlantic salmon (Salmo salar, L.) during repeated amoebic gill disease (AGD) field exposure and survival challenge

(2009) Richard S. Taylor et al.   AQUACULTURE

Effect of extracellular products ofTenacibaculum maritimumin Atlantic salmon,Salmo salarL.

(2009) R van Gelderen et al.   JOURNAL OF FISH DISEASES

Resistance to amoebic gill disease (AGD) is characterised by the transcriptional dysregulation of immune and cell cycle pathways

(2008) James W. Wynne et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Coordinated down-regulation of the antigen processing machinery in the gills of amoebic gill disease-affected Atlantic salmon (Salmo salar L.)

(2008) N.D. Young et al.   MOLECULAR IMMUNOLOGY

The Interplay between Entamoeba and Enteropathogenic Bacteria Modulates Epithelial Cell Damage

(2008) José Manuel Galván-Moroyoqui et al.   PLoS Neglected Tropical Diseases