Combining Random Forests and a Signal Detection Method Leads to the Robust Detection of Genotype-Phenotype Associations

GWAS and fine-mapping of livability and six disease traits in Holstein cattle

(2020) Ellen Freebern et al.   BMC GENOMICS

Identification of Candidate Growth-Related SNPs and Genes Using GWAS in Brown-Marbled Grouper (Epinephelus fuscoguttatus)

(2020) Yang Yang et al.   MARINE BIOTECHNOLOGY

Identification of Age-Specific and Common Key Regulatory Mechanisms Governing Eggshell Strength in Chicken Using Random Forests

(2020) Faisal Ramzan et al.   Genes

Reaching the End-Game for GWAS: Machine Learning Approaches for the Prioritization of Complex Disease Loci

(2020) Hannah L. Nicholls et al.   Frontiers in Genetics

Editorial: The Applications of New Multi-Locus GWAS Methodologies in the Genetic Dissection of Complex Traits

(2019) Yuan-Ming Zhang et al.   Frontiers in Plant Science

Bipotent stem cells support the cyclical regeneration of endometrial epithelium of the murine uterus

(2019) Shiying Jin   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The transcriptome landscapes of ovary and three oviduct segments during chicken (Gallus gallus) egg formation

(2019) ZhongTao Yin et al.   GENOMICS

Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data

(2019) Alberto Romagnoni et al.   Scientific Reports

Solving the missing heritability problem

(2019) Alexander I. Young   PLoS Genetics

Comparing regression, naive Bayes, and random forest methods in the prediction of individual survival to second lactation in Holstein cattle

(2019) E.M.M. van der Heide et al.   JOURNAL OF DAIRY SCIENCE

Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean

(2019) Yang Liu et al.   Frontiers in Genetics

GWAS identifies genetic variants associated with omega-3 fatty acid composition of Atlantic salmon fillets

(2019) Siri S. Horn et al.   AQUACULTURE

Influence of single nucleotide polymorphisms in some candidate genes related to the performance traits in Italian beef cattle breeds

(2019) Francesca Maria Sarti et al.   Livestock Science

Comparing Single-SNP, Multi-SNP, and Haplotype-Based Approaches in Association Studies for Major Traits in Barley

(2019) Amina Abed et al.   Plant Genome

The Post-GWAS Era: From Association to Function

(2018) Michael D. Gallagher et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Associations between variants of bone morphogenetic protein 7 gene and growth traits in chickens

(2018) Y. Wang et al.   BRITISH POULTRY SCIENCE

Two-stage Bayesian approach for GWAS with known genealogy

(2018) Carmen Armero et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

A practical introduction to Random Forest for genetic association studies in ecology and evolution

(2018) Marine S. O. Brieuc et al.   Molecular Ecology Resources

Genetic Dissection of Maize Embryonic Callus Regenerative Capacity Using Multi-Locus Genome-Wide Association Studies

(2018) Langlang Ma et al.   Frontiers in Plant Science

Genome-Wide Association Analysis of Age-Dependent Egg Weights in Chickens

(2018) Zhuang Liu et al.   Frontiers in Genetics

Genomic Prediction of Breeding Values Using a Subset of SNPs Identified by Three Machine Learning Methods

(2018) Bo Li et al.   Frontiers in Genetics

Genome-Wide Association Mapping of Starch Pasting Properties in Maize Using Single-Locus and Multi-Locus Models

(2018) Yang Xu et al.   Frontiers in Plant Science

Single-Locus and Multi-Locus Genome-Wide Association Studies in the Genetic Dissection of Fiber Quality Traits in Upland Cotton (Gossypium hirsutum L.)

(2018) Chengqi Li et al.   Frontiers in Plant Science

The Application of Multi-Locus GWAS for the Detection of Salt-Tolerance Loci in Rice

(2018) Yanru Cui et al.   Frontiers in Plant Science

What can genome-wide association studies tell us about the evolutionary forces maintaining genetic variation for quantitative traits?

(2017) Emily B. Josephs et al.   NEW PHYTOLOGIST

RNA-Seq reveals seven promising candidate genes affecting the proportion of thick egg albumen in layer-type chickens

(2017) Yi Wan et al.   Scientific Reports

Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice

(2017) Gopal Misra et al.   Scientific Reports

Estimating Modifying Effect of Age on Genetic and Environmental Variance Components in Twin Models

(2016) L. He et al.   GENETICS

Genome-wide association data classification and SNPs selection using two-stage quality-based Random Forests

(2015) Thanh-Tung Nguyen et al.   BMC GENOMICS

Epithelial and neural cadherin expression in the mammalian reproductive tract and gametes and their participation in fertilization-related events

(2015) Mónica Hebe Vazquez-Levin et al.   DEVELOPMENTAL BIOLOGY

Feature Selection with theBorutaPackage

(2015) Miron B. Kursa et al.   Journal of Statistical Software

Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process

(2014) Aurélien Brionne et al.   BMC GENOMICS

Influence of single nucleotide polymorphisms in the myostatin and myogenic factor 5 muscle growth-related genes on the performance traits of Marchigiana beef cattle1

(2014) F. M. Sarti et al.   JOURNAL OF ANIMAL SCIENCE

Comparison of Methods to Account for Relatedness in Genome-Wide Association Studies with Family-Based Data

(2014) Jakris Eu-ahsunthornwattana et al.   PLoS Genetics

The sodium channel gene family is specifically expressed in hen uterus and associated with eggshell quality traits

(2013) Yan-Feng Fan et al.   BMC GENETICS

Cadherin-Mediated Cell–Cell Adhesion and Signaling in the Skeleton

(2013) Pierre J. Marie et al.   CALCIFIED TISSUE INTERNATIONAL

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Correction for population stratification in random forest analysis

(2012) Yang Zhao et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Chapter 11: Genome-Wide Association Studies

(2012) William S. Bush et al.   PLoS Computational Biology

Variability in the Heritability of Body Mass Index: A Systematic Review and Meta-Regression

(2012) Cathy E. Elks et al.   Frontiers in Endocrinology

Accounting for multiple comparisons in a genome-wide association study (GWAS)

(2011) Randall C Johnson et al.   BMC GENOMICS

FaST linear mixed models for genome-wide association studies

(2011) Christoph Lippert et al.   NATURE METHODS

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

Factors Affecting the Power of Haplotype Markers in Association Studies

(2011) Martha T. Hamblin et al.   Plant Genome

Molecular mechanisms for regulation of intestinal calcium absorption by vitamin D and other factors

(2010) James C. Fleet et al.   CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

A structural overview of the plasma membrane Na+,K+-ATPase and H+-ATPase ion pumps

(2010) J. Preben Morth et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Performance of Single Nucleotide Polymorphisms versus Haplotypes for Genome-Wide Association Analysis in Barley

(2010) Aaron J. Lorenz et al.   PLoS One

Avoiding the high Bonferroni penalty in genome-wide association studies

(2009) Xiaoyi Gao et al.   GENETIC EPIDEMIOLOGY

Kernel-Based Association Test

(2008) Hsin-Chou Yang et al.   GENETICS