Genomic analyses reveal the genetic basis of early maturity and identification of loci and candidate genes in upland cotton ( Gossypium hirsutum L.)
出版年份 2020 全文链接
标题
Genomic analyses reveal the genetic basis of early maturity and identification of loci and candidate genes in upland cotton (
Gossypium hirsutum
L.)
作者
关键词
-
出版物
PLANT BIOTECHNOLOGY JOURNAL
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2020-07-12
DOI
10.1111/pbi.13446
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield
- (2018) Zhiying Ma et al. NATURE GENETICS
- Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants
- (2018) Fu-Yuan Zhu et al. Plant Methods
- Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense
- (2018) Maojun Wang et al. NATURE GENETICS
- Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits
- (2017) Lei Fang et al. NATURE GENETICS
- Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits
- (2017) Rajeev K Varshney et al. NATURE GENETICS
- Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication
- (2017) Maojun Wang et al. NATURE GENETICS
- Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs
- (2017) Cong Huang et al. PLANT BIOTECHNOLOGY JOURNAL
- Gibberellin in plant height control: old player, new story
- (2017) Yijun Wang et al. PLANT CELL REPORTS
- The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis
- (2017) Hung-Chi Chen et al. PLANT MOLECULAR BIOLOGY
- High-density genetic linkage map construction by F2 populations and QTL analysis of early-maturity traits in upland cotton (Gossypium hirsutum L.)
- (2017) Libei Li et al. PLoS One
- QTL mapping for flowering-time and photoperiod insensitivity of cotton Gossypium darwinii Watt
- (2017) Fakhriddin N. Kushanov et al. PLoS One
- SweepFinder2: increased sensitivity, robustness and flexibility
- (2016) Michael DeGiorgio et al. BIOINFORMATICS
- High-density linkage map construction and QTL analysis for earliness-related traits in Gossypium hirsutum L
- (2016) Xiaoyun Jia et al. BMC GENOMICS
- Identification of favorable SNP alleles and candidate genes for traits related to early maturity via GWAS in upland cotton
- (2016) Junji Su et al. BMC GENOMICS
- Independent Domestication of Two Old World Cotton Species
- (2016) Simon Renny-Byfield et al. Genome Biology and Evolution
- Mapping of genes for flower-related traits and QTLs for flowering time in an interspecific population of Gossypium hirsutum × G. darwinii
- (2016) SHUWEN ZHANG et al. JOURNAL OF GENETICS
- ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis
- (2016) Shan Gao et al. Molecular Plant
- Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice
- (2016) Kenji Yano et al. NATURE GENETICS
- Association mapping identifies markers related to major early-maturating traits in upland cotton (Gossypium hirsutumL.)
- (2016) Cheng-Qi Li et al. PLANT BREEDING
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Landscape of genomic diversity and trait discovery in soybean
- (2016) Babu Valliyodan et al. Scientific Reports
- Two genomic regions associated with fiber quality traits in Chinese upland cotton under apparent breeding selection
- (2016) Junji Su et al. Scientific Reports
- Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm
- (2015) Jiaoping Zhang et al. BMC GENOMICS
- Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean
- (2015) Zhengkui Zhou et al. NATURE BIOTECHNOLOGY
- Candidate Gene Identification of Flowering Time Genes in Cotton
- (2015) Corrinne E. Grover et al. Plant Genome
- HANABA TARANU (HAN) Bridges Meristem and Organ Primordia Boundaries through PINHEAD, JAGGED, BLADE-ON-PETIOLE2 and CYTOKININ OXIDASE 3 during Flower Development in Arabidopsis
- (2015) Lian Ding et al. PLoS Genetics
- Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa)
- (2015) Qiang He et al. PLoS One
- SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
- (2014) Tae-Ho Lee et al. BMC GENOMICS
- Molecular Genetic Mapping of the Major Effect Photoperiod Response Locus in Pima Cotton ( L.)
- (2014) Linglong Zhu et al. CROP SCIENCE
- fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets
- (2014) Anil Raj et al. GENETICS
- Genomic analyses provide insights into the history of tomato breeding
- (2014) Tao Lin et al. NATURE GENETICS
- A versatile system for functional analysis of genes and microRNAs in cotton
- (2014) Zhouhang Gu et al. PLANT BIOTECHNOLOGY JOURNAL
- The Cysteine Protease CEP1, a Key Executor Involved in Tapetal Programmed Cell Death, Regulates Pollen Development inArabidopsis
- (2014) Dandan Zhang et al. PLANT CELL
- Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing
- (2013) Ying-hui Li et al. BMC GENOMICS
- QTL analysis for early-maturing traits in cotton using two upland cotton (Gossypium hirsutum L.) crosses
- (2013) Chengqi Li et al. BREEDING SCIENCE
- SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes
- (2013) Pavlos Pavlidis et al. MOLECULAR BIOLOGY AND EVOLUTION
- A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity
- (2013) Jianjian Qi et al. NATURE GENETICS
- QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations
- (2013) Hiroki Takagi et al. PLANT JOURNAL
- Generation and Analysis of a Large-Scale Expressed Sequence Tag Database from a Full-Length Enriched cDNA Library of Developing Leaves of Gossypium hirsutum L
- (2013) Min Lin et al. PLoS One
- GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data
- (2012) Jianxing Feng et al. BIOINFORMATICS
- Comparative population genomics of maize domestication and improvement
- (2012) Matthew B Hufford et al. NATURE GENETICS
- Genome-wide genetic changes during modern breeding of maize
- (2012) Yinping Jiao et al. NATURE GENETICS
- Genome-wide efficient mixed-model analysis for association studies
- (2012) Xiang Zhou et al. NATURE GENETICS
- Early Senescence and Cell Death in Arabidopsis saul1 Mutants Involves the PAD4-Dependent Salicylic Acid Pathway
- (2012) K. Vogelmann et al. PLANT PHYSIOLOGY
- Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
- (2012) M. T. Maurano et al. SCIENCE
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- WRKY22 transcription factor mediates dark-induced leaf senescence in Arabidopsis
- (2011) Xiang Zhou et al. MOLECULES AND CELLS
- Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
- (2011) Xun Xu et al. NATURE BIOTECHNOLOGY
- TheArabidopsisNAC Transcription Factor VNI2 Integrates Abscisic Acid Signals into Leaf Senescence via theCOR/RDGenes
- (2011) So-Dam Yang et al. PLANT CELL
- Mutation of RiceBC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation
- (2011) Juan Li et al. PLANT CELL
- Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)
- (2011) Lei-Ying Zheng et al. GENOME BIOLOGY
- GCTA: A Tool for Genome-wide Complex Trait Analysis
- (2010) Jian Yang et al. AMERICAN JOURNAL OF HUMAN GENETICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
- (2010) Hon-Ming Lam et al. NATURE GENETICS
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Flowering time control and applications in plant breeding
- (2009) Christian Jung et al. TRENDS IN PLANT SCIENCE
- Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death
- (2008) Cha Young Kim et al. NEW PHYTOLOGIST
- Genetic Analysis Reveals That C19-GA 2-Oxidation Is a Major Gibberellin Inactivation Pathway in Arabidopsis
- (2008) I. Rieu et al. PLANT CELL
- The Arabidopsis sweetie mutant is affected in carbohydrate metabolism and defective in the control of growth, development and senescence
- (2008) Nicolas Veyres et al. PLANT JOURNAL
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started