Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication
出版年份 2017 全文链接
标题
Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication
作者
关键词
-
出版物
NATURE GENETICS
Volume 49, Issue 4, Pages 579-587
出版商
Springer Nature
发表日期
2017-03-07
DOI
10.1038/ng.3807
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genome-wide SSR-based association mapping for fiber quality in nation-wide upland cotton inbreed cultivars in China
- (2016) Xinhui Nie et al. BMC GENOMICS
- Fibre elongation requires normal redox homeostasis modulated by cytosolic ascorbate peroxidase in cotton (Gossypium hirsutum)
- (2016) Kai Guo et al. JOURNAL OF EXPERIMENTAL BOTANY
- Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea
- (2016) Feng Cheng et al. NATURE GENETICS
- Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation
- (2016) Maojun Wang et al. NUCLEIC ACIDS RESEARCH
- Enhancer Evolution across 20 Mammalian Species
- (2015) Diego Villar et al. CELL
- Advances in understanding cis regulation of the plant gene with an emphasis on comparative genomics
- (2015) Diane G Burgess et al. CURRENT OPINION IN PLANT BIOLOGY
- De Novo Plant Genome Assembly Based on Chromatin Interactions: A Case Study of Arabidopsis thaliana
- (2015) Ting Xie et al. Molecular Plant
- Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution
- (2015) Fuguang Li et al. NATURE BIOTECHNOLOGY
- Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean
- (2015) Zhengkui Zhou et al. NATURE BIOTECHNOLOGY
- Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
- (2015) Tianzhen Zhang et al. NATURE BIOTECHNOLOGY
- Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo
- (2015) Matthew T Maurano et al. NATURE GENETICS
- Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes
- (2015) Jiali Zhuang et al. NUCLEIC ACIDS RESEARCH
- TopDom: an efficient and deterministic method for identifying topological domains in genomes
- (2015) Hanjun Shin et al. NUCLEIC ACIDS RESEARCH
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Genome-wide analysis of local chromatin packing inArabidopsis thaliana
- (2014) Congmao Wang et al. GENOME RESEARCH
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Molecular analysis of proanthocyanidins related to pigmentation in brown cotton fibre ( Gossypium hirsutum L.)
- (2014) Hongjie Feng et al. JOURNAL OF EXPERIMENTAL BOTANY
- A comparative meta-analysis of QTL between intraspecific Gossypium hirsutum and interspecific G. hirsutum × G. barbadense populations
- (2014) Joseph I. Said et al. MOLECULAR GENETICS AND GENOMICS
- Genomic analyses provide insights into the history of tomato breeding
- (2014) Tao Lin et al. NATURE GENETICS
- Cotton (Gossypium hirsutum) 14-3-3 proteins participate in regulation of fibre initiation and elongation by modulating brassinosteroid signalling
- (2014) Ying Zhou et al. PLANT BIOTECHNOLOGY JOURNAL
- Transcriptome and Biochemical Analyses Revealed a Detailed Proanthocyanidin Biosynthesis Pathway in Brown Cotton Fiber
- (2014) Yue-Hua Xiao et al. PLoS One
- Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding
- (2014) Rajeev K. Varshney et al. PLOS BIOLOGY
- Comparative Evolutionary and Developmental Dynamics of the Cotton (Gossypium hirsutum) Fiber Transcriptome
- (2014) Mi-Jeong Yoo et al. PLoS Genetics
- Genomic prediction in CIMMYT maize and wheat breeding programs
- (2013) J Crossa et al. HEREDITY
- Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations
- (2013) Yubo Zhang et al. NATURE
- The Dual Functions of WLIM1a in Cell Elongation and Secondary Wall Formation in Developing Cotton Fibers
- (2013) L.-B. Han et al. PLANT CELL
- ARABIDOPSIS THALIANA HOMEOBOX25 Uncovers a Role for Gibberellins in Seed Longevity
- (2013) E. Bueso et al. PLANT PHYSIOLOGY
- A Genetic and Metabolic Analysis Revealed that Cotton Fiber Cell Development Was Retarded by Flavonoid Naringenin
- (2013) J. Tan et al. PLANT PHYSIOLOGY
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
- (2012) Guoliang Li et al. CELL
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- An expansive human regulatory lexicon encoded in transcription factor footprints
- (2012) Shane Neph et al. NATURE
- A map of rice genome variation reveals the origin of cultivated rice
- (2012) Xuehui Huang et al. NATURE
- Comparative population genomics of maize domestication and improvement
- (2012) Matthew B Hufford et al. NATURE GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Identifying ChIP-seq enrichment using MACS
- (2012) Jianxing Feng et al. Nature Protocols
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Identification of Regulatory DNA Elements and Protein-Binding Footprints Using Signatures of Open Chromatin in Arabidopsis
- (2012) W. Zhang et al. PLANT CELL
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- High-resolution mapping of open chromatin in the rice genome
- (2011) W. Zhang et al. GENOME RESEARCH
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication
- (2010) Ryan A Rapp et al. BMC BIOLOGY
- Population differentiation as a test for selective sweeps
- (2010) H. Chen et al. GENOME RESEARCH
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Genome-wide association studies of 14 agronomic traits in rice landraces
- (2010) Xuehui Huang et al. NATURE GENETICS
- TRICHOME BIREFRINGENCE and Its Homolog AT5G01360 Encode Plant-Specific DUF231 Proteins Required for Cellulose Biosynthesis in Arabidopsis
- (2010) V. Bischoff et al. PLANT PHYSIOLOGY
- Genetic perspectives on crop domestication
- (2010) Briana L. Gross et al. TRENDS IN PLANT SCIENCE
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- High Temperature-Mediated Adaptations in Plant Architecture Require the bHLH Transcription Factor PIF4
- (2009) Maria A. Koini et al. CURRENT BIOLOGY
- An oestrogen-receptor-α-bound human chromatin interactome
- (2009) Melissa J. Fullwood et al. NATURE
- BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
- (2009) Ken Chen et al. NATURE METHODS
- The Rab GTPase RabA4d Regulates Pollen Tube Tip Growth in Arabidopsis thaliana
- (2009) A. L. Szumlanski et al. PLANT CELL
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- F-Seq: a feature density estimator for high-throughput sequence tags
- (2008) A. P. Boyle et al. BIOINFORMATICS
- Molecular cloning, expression profiling, and yeast complementation of 19 -tubulin cDNAs from developing cotton ovules
- (2008) X.-C. He et al. JOURNAL OF EXPERIMENTAL BOTANY
- Transcriptional Profiling of Mature Arabidopsis Trichomes Reveals That NOECK Encodes the MIXTA-Like Transcriptional Regulator MYB106
- (2008) M. J. Jakoby et al. PLANT PHYSIOLOGY
- The Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel Metabolism
- (2008) Ran Hovav et al. PLoS Genetics
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started