Differentiation, evolution and utilization of natural alleles for cold adaptability at the reproductive stage in rice

Natural variation in the HAN1 gene confers chilling tolerance in rice and allowed adaptation to a temperate climate

(2019) Donghai Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The bZIP73 transcription factor controls rice cold tolerance at the reproductive stage

(2019) Citao Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

GWAS with principal component analysis identifies a gene comprehensively controlling rice architecture

(2019) Kenji Yano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Genes Related to Cold Tolerance and a Functional Allele That Confers Cold Tolerance

(2018) Ning Xiao et al.   PLANT PHYSIOLOGY

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

QTL and QTL networks for cold tolerance at the reproductive stage detected using selective introgression in rice

(2018) Yuntao Liang et al.   PLoS One

Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates

(2018) Citao Liu et al.   Nature Communications

Loci and natural alleles underlying robust roots and adaptive domestication of upland ecotype rice in aerobic conditions

(2018) Yan Zhao et al.   PLoS Genetics

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

Bi-directional selection in upland rice leads to its adaptive differentiation from lowland rice on drought resistance and productivity

(2018) Hui Xia et al.   Molecular Plant

Natural variation reveals that OsSAP16 controls low-temperature germination in rice

(2017) Xiang Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fine mapping of QTL qCTB10-2 that confers cold tolerance at the booting stage in rice

(2017) Jilong Li et al.   THEORETICAL AND APPLIED GENETICS

Natural variation in CTB4a enhances rice adaptation to cold habitats

(2017) Zhanying Zhang et al.   Nature Communications

Genomic variation associated with local adaptation of weedy rice during de-domestication

(2017) Jie Qiu et al.   Nature Communications

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

OsSPL13 controls grain size in cultivated rice

(2016) Lizhen Si et al.   NATURE GENETICS

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

(2016) Kenji Yano et al.   NATURE GENETICS

Detection of QTLs for cold tolerance of rice cultivar ‘Kuchum’ and effect of QTL pyramiding

(2016) Takashi Endo et al.   THEORETICAL AND APPLIED GENETICS

GAPIT Version 2: An Enhanced Integrated Tool for Genomic Association and Prediction

(2016) You Tang et al.   Plant Genome

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Identification and Fine Mapping of a Stably Expressed QTL for Cold Tolerance at the Booting Stage Using an Interconnected Breeding Population in Rice

(2015) Yajun Zhu et al.   PLoS One

QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.)

(2014) Suk-Man Kim et al.   MOLECULAR GENETICS AND GENOMICS

SNP-Seek database of SNPs derived from 3000 rice genomes

(2014) Nickolai Alexandrov et al.   NUCLEIC ACIDS RESEARCH

Rice and cold stress: methods for its evaluation and summary of cold tolerance-related quantitative trait loci

(2014) Qi Zhang et al.   Rice

Genetical and morphological characterization of cold tolerance at fertilization stage in rice

(2013) Hiroshi Shinada et al.   BREEDING SCIENCE

Avoiding damage and achieving cold tolerance in rice plants

(2013) Renata Pereira da Cruz et al.   Food and Energy Security

Functional relevance of J-protein family of rice (Oryza sativa)

(2012) Neelam K Sarkar et al.   CELL STRESS & CHAPERONES

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Enhanced chilling tolerance at the booting stage in rice by transgenic overexpression of the ascorbate peroxidase gene, OsAPXa

(2011) Yutaka Sato et al.   PLANT CELL REPORTS

Seed size is determined by the combinations of the genes controlling different seed characteristics in rice

(2011) Song Yan et al.   THEORETICAL AND APPLIED GENETICS

Delimitation of a QTL region controlling cold tolerance at booting stage of a cultivar, ‘Lijiangxintuanheigu’, in rice, Oryza sativa L.

(2011) S. Shirasawa et al.   THEORETICAL AND APPLIED GENETICS

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A QTL controlling low temperature induced spikelet sterility at booting stage in rice

(2010) C. Ye et al.   EUPHYTICA

QTLs of cold tolerance-related traits at the booting stage for NIL-RILs in rice revealed by SSR

(2010) Yawen Zeng et al.   Genes & Genomics

HapStar: automated haplotype network layout and visualization

(2010) A. G. F. TEACHER et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Map-based cloning of the rice cold tolerance gene Ctb1

(2010) Koji Saito et al.   PLANT SCIENCE

Fine mapping a QTL qCTB7 for cold tolerance at the booting stage on rice chromosome 7 using a near-isogenic line

(2010) Lei Zhou et al.   THEORETICAL AND APPLIED GENETICS

A core collection and mini core collection of Oryza sativa L. in China

(2010) Hongliang Zhang et al.   THEORETICAL AND APPLIED GENETICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Identification and mapping of quantitative trait loci for cold tolerance at the booting stage in a japonica rice near-isogenic line

(2007) Li-Ming Xu et al.   PLANT SCIENCE