Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates

Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

(2018) Peter Civáň et al.   BMC EVOLUTIONARY BIOLOGY

OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice

(2018) Liping Chen et al.   NEW PHYTOLOGIST

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice

(2017) Hongru Wang et al.   GENOME RESEARCH

The plant perceptron connects environment to development

(2017) Ben Scheres et al.   NATURE

Assessment of Five Chilling Tolerance Traits and GWAS Mapping in Rice Using the USDA Mini-Core Collection

(2017) Michael R. Schläppi et al.   Frontiers in Plant Science

Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis

(2017) Ehsan Shakiba et al.   PLoS One

Basic leucine zipper (bZIP) transcription factors involved in abiotic stresses: A molecular model of a wheat bZIP factor and implications of its structure in function

(2016) Pradeep Sornaraj et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication

(2016) Hongru Wang et al.   Molecular Plant

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies

(2015) Bin Hu et al.   NATURE GENETICS

The Roles of ROS and ABA in Systemic Acquired Acclimation

(2015) Ron Mittler et al.   PLANT CELL

New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis

(2015) Yan Lv et al.   PLANT CELL AND ENVIRONMENT

Sustained low abscisic acid levels increase seedling vigor under cold stress in rice (Oryza sativa L.)

(2015) Ryosuke Mega et al.   Scientific Reports

DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and Salt Tolerance in Rice

(2015) Long-Gang Cui et al.   PLoS Genetics

Mini Review Roles of the bZIP gene family in rice

(2014) Z.G. E et al.   GENETICS AND MOLECULAR RESEARCH

Overexpression of the rice basic leucine zipper transcription factor OsbZIP12 confers drought tolerance to rice and makes seedlings hypersensitive to ABA

(2014) Joungsu Joo et al.   Plant Biotechnology Reports

RiceLTG1is involved in adaptive growth and fitness under low ambient temperature

(2014) Guangwen Lu et al.   PLANT JOURNAL

Archaeological and genetic insights into the origins of domesticated rice

(2014) B. L. Gross et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice and cold stress: methods for its evaluation and summary of cold tolerance-related quantitative trait loci

(2014) Qi Zhang et al.   Rice

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice

(2013) Citao Liu et al.   PLANT MOLECULAR BIOLOGY

Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice

(2013) Hao Du et al.   PLANT MOLECULAR BIOLOGY

Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia

(2013) W. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simple, Rapid, and Simultaneous Assay of Multiple Carboxyl Containing Phytohormones in Wounded Tomatoes by UPLC-MS/MS Using Single SPE Purification and Isotope Dilution

(2012) Jihong FU et al.   ANALYTICAL SCIENCES

Biochemical identification of the OsMKK6–OsMPK3 signalling pathway for chilling stress tolerance in rice

(2012) Guosheng Xie et al.   BIOCHEMICAL JOURNAL

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets

(2012) N. Alachiotis et al.   BIOINFORMATICS

Identification of Cold-Tolerant Breeding Lines by Quantitative Trait Loci Associated with Cold Tolerance in Rice

(2012) K. K. Jena et al.   CROP SCIENCE

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

BioVyon Protein A, an alternative solid-phase affinity matrix for chromatin immunoprecipitation

(2011) Igor Chernukhin et al.   ANALYTICAL BIOCHEMISTRY

Cold sensitivity in rice (Oryza sativaL.) is strongly correlated with a naturally occurring I99V mutation in the multifunctional glutathione transferase isoenzyme GSTZ2

(2011) Sang-Ic Kim et al.   BIOCHEMICAL JOURNAL

Signal transduction during cold, salt, and drought stresses in plants

(2011) Guo-Tao Huang et al.   MOLECULAR BIOLOGY REPORTS

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes

(2011) Yang Zhang et al.   Plant Methods

Maize ABP9 enhances tolerance to multiple stresses in transgenic Arabidopsis by modulating ABA signaling and cellular levels of reactive oxygen species

(2011) Xia Zhang et al.   PLANT MOLECULAR BIOLOGY

bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice

(2011) Citao Liu et al.   PLANTA

HapStar: automated haplotype network layout and visualization

(2010) A. G. F. TEACHER et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Map-based cloning of the rice cold tolerance gene Ctb1

(2010) Koji Saito et al.   PLANT SCIENCE

Consilience of genetics and archaeobotany in the entangled history of rice

(2010) Dorian Q. Fuller et al.   Archaeological and Anthropological Sciences

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Genome-wide scans for footprints of natural selection

(2009) T. K. Oleksyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Raf-Like MAPKKK Gene DSM1 Mediates Drought Resistance through Reactive Oxygen Species Scavenging in Rice

(2009) J. Ning et al.   PLANT PHYSIOLOGY

Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexesin planta

(2008) Rainer Waadt et al.   PLANT JOURNAL

The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

(2008) Luiz Gustavo Guedes Corrêa et al.   PLoS One