Consequences of Single-Locus and Tightly Linked Genomic Architectures for Evolutionary Responses to Environmental Change

Balancing selection via life-history trade-offs maintains an inversion polymorphism in a seaweed fly

(2020) Claire Mérot et al.   Nature Communications

Modular chromosome rearrangements reveal parallel and nonparallel adaptation in a marine fish

(2020) Tony Kess et al.   Ecology and Evolution

From molecules to populations: appreciating and estimating recombination rate variation

(2020) Joshua V. Peñalba et al.   NATURE REVIEWS GENETICS

A Roadmap for Understanding the Evolutionary Significance of Structural Genomic Variation

(2020) Claire Mérot et al.   TRENDS IN ECOLOGY & EVOLUTION

Massive haplotypes underlie ecotypic differentiation in sunflowers

(2020) Marco Todesco et al.   NATURE

The role of structural genomic variants in population differentiation and ecotype formation in Timema cristinae walking sticks

(2019) Kay Lucek et al.   MOLECULAR ECOLOGY

Disentangling structural genomic and behavioral barriers in a sea of connectivity

(2019) Julia M.I. Barth et al.   MOLECULAR ECOLOGY

Linking a mutation to survival in wild mice

(2019) Rowan D. H. Barrett et al.   SCIENCE

Going beyond SNPs: the role of structural genomic variants in adaptive evolution and species diversification

(2019) Maren Wellenreuther et al.   MOLECULAR ECOLOGY

The genomic pool of standing structural variation outnumbers single nucleotide polymorphism by three-fold in the marine teleost Chrysophrys auratus

(2019) Andrew Catanach et al.   MOLECULAR ECOLOGY

Retention of a chromosomal inversion from an anadromous ancestor provides the genetic basis for alternative freshwater ecotypes in rainbow trout

(2019) Martin C. Arostegui et al.   MOLECULAR ECOLOGY

Coevolution of Genome Architecture and Social Behavior

(2019) Dustin R. Rubenstein et al.   TRENDS IN ECOLOGY & EVOLUTION

Contrasting genomic shifts underlie parallel phenotypic evolution in response to fishing

(2019) Nina O. Therkildsen et al.   SCIENCE

A migration-associated supergene reveals loss of biocomplexity in Atlantic cod

(2019) Tony Kess et al.   Science Advances

An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features

(2019) Beth A. Rowan et al.   GENETICS

Selection on VPS13A linked to migration in a songbird

(2019) David P. L. Toews et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Weak genetic structure despite strong genomic signal in lesser sandeel in the North Sea

(2019) Belén Jiménez‐Mena et al.   Evolutionary Applications

Unbiased estimation of linkage disequilibrium from unphased data

(2019) Aaron P Ragsdale et al.   MOLECULAR BIOLOGY AND EVOLUTION

Conservation and Management of Salmon in the Age of Genomics

(2019) Robin S. Waples et al.   Annual Review of Animal Biosciences

Sex-dependent dominance maintains migration supergene in rainbow trout

(2019) Devon E. Pearse et al.   Nature Ecology & Evolution

Genomic architecture of parallel ecological divergence: Beyond a single environmental contrast

(2019) Hernán E. Morales et al.   Science Advances

Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data

(2018) Timothy P. Bilton et al.   GENETICS

Dissecting the role of a large chromosomal inversion in life history divergence throughout the Mimulus guttatus species complex

(2018) J.M. Coughlan et al.   MOLECULAR ECOLOGY

Systems genetic analysis of inversion polymorphisms in the malaria mosquitoAnopheles gambiae

(2018) Changde Cheng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple large inversions and breakpoint rewiring of gene expression in the evolution of the fire ant social supergene

(2018) Yu-Ching Huang et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon

(2018) Shawn R. Narum et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Intercontinental karyotype–environment parallelism supports a role for a chromosomal inversion in local adaptation in a seaweed fly

(2018) Claire Mérot et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

(2018) Matthew R. Jones et al.   SCIENCE

Genomic signals of selection predict climate-driven population declines in a migratory bird

(2018) Rachael A. Bay et al.   SCIENCE

Eco-Evolutionary Genomics of Chromosomal Inversions

(2018) Maren Wellenreuther et al.   TRENDS IN ECOLOGY & EVOLUTION

Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data

(2018) Timothy P. Bilton et al.   GENETICS

Social tipping points in animal societies in response to heat stress

(2018) Grant Navid Doering et al.   Nature Ecology & Evolution

Selection at a genomic region of major effect is responsible for evolution of complex life histories in anadromous steelhead

(2018) Steven J. Micheletti et al.   BMC EVOLUTIONARY BIOLOGY

Genomics and conservation units: The genetic basis of adult migration timing in Pacific salmonids

(2018) Robin S. Waples et al.   Evolutionary Applications

The adaptive significance of chromosomal inversion polymorphisms in Drosophila melanogaster

(2018) Martin Kapun et al.   MOLECULAR ECOLOGY

Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes

(2018) Rui Faria et al.   MOLECULAR ECOLOGY

Pervasive gene conversion in chromosomal inversion heterozygotes

(2018) Katharine L. Korunes et al.   MOLECULAR ECOLOGY

Chromosomal inversions associated with environmental adaptation in honeybees

(2018) Matthew J. Christmas et al.   MOLECULAR ECOLOGY

Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon

(2018) Kyle Wellband et al.   MOLECULAR ECOLOGY

Anthropogenic habitat alteration leads to rapid loss of adaptive variation and restoration potential in wild salmon populations

(2018) Tasha Q. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosome inversions and ecological plasticity in the main African malaria mosquitoes

(2017) Diego Ayala et al.   EVOLUTION

Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions

(2017) P R Berg et al.   HEREDITY

Genomics of natural populations: Evolutionary forces that establish and maintain gene arrangements in Drosophila pseudoobscura

(2017) Zachary L. Fuller et al.   MOLECULAR ECOLOGY

Genome architecture enables local adaptation of Atlantic cod despite high connectivity

(2017) Julia M. I. Barth et al.   MOLECULAR ECOLOGY

Long-term balancing selection on chromosomal variants associated with crypsis in a stick insect

(2017) Dorothea Lindtke et al.   MOLECULAR ECOLOGY

Recombination rate plasticity: revealing mechanisms by design

(2017) Laurie S. Stevison et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parallel adaptive evolution of geographically distant herring populations on both sides of the North Atlantic Ocean

(2017) Sangeet Lamichhaney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An ancient selective sweep linked to reproductive life history evolution in sockeye salmon

(2017) Andrew J. Veale et al.   Scientific Reports

Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees

(2017) Andreas Wallberg et al.   PLoS Genetics

Genomic models predict successful coral adaptation if future ocean warming rates are reduced

(2017) Rachael A. Bay et al.   Science Advances

Young inversion with multiple linked QTLs under selection in a hybrid zone

(2017) Cheng-Ruei Lee et al.   Nature Ecology & Evolution

Social polymorphism is favoured by the co-evolution of dispersal with social behaviour

(2017) Charles Mullon et al.   Nature Ecology & Evolution

Identification of a single genomic region associated with seasonal river return timing in adult Scottish Atlantic salmon (Salmo salar), using a genome-wide association study

(2017) Eef Cauwelier et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Genetic variation in plasticity of life-history traits between Atlantic cod (Gadus morhua) populations exposed to contrasting thermal regimes

(2016) Rebekah A. Oomen et al.   CANADIAN JOURNAL OF ZOOLOGY

Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura

(2016) Zachary L. Fuller et al.   GENETICS

“Islands of Divergence” in the Atlantic Cod Genome Represent Polymorphic Chromosomal Rearrangements

(2016) Marte Sodeland et al.   Genome Biology and Evolution

Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci

(2016) R K Waples et al.   HEREDITY

Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster

(2016) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod

(2016) Tina Graceline Kirubakaran et al.   MOLECULAR ECOLOGY

Genomics of local adaptation with gene flow

(2016) Anna Tigano et al.   MOLECULAR ECOLOGY

Production of hornless dairy cattle from genome-edited cell lines

(2016) Daniel F Carlson et al.   NATURE BIOTECHNOLOGY

Genetic architecture of age at maturity can generate divergent and disruptive harvest-induced evolution

(2016) Anna Kuparinen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Recombination Rate Evolution and the Origin of Species

(2016) Daniel Ortiz-Barrientos et al.   TRENDS IN ECOLOGY & EVOLUTION

Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod

(2016) Paul R. Berg et al.   Scientific Reports

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

(2016) Alvaro Martinez Barrio et al.   eLife

Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura

(2016) Zachary L. Fuller et al.   GENETICS

The consequences of genomic architecture on ecological speciation in postglacial fishes

(2016) Sean M. Rogers et al.   Current Zoology

Adaptive divergence in the monkey flower Mimulus guttatus is maintained by a chromosomal inversion

(2015) Alex D. Twyford et al.   EVOLUTION

Genes located in a chromosomal inversion are correlated with territorial song in white-throated sparrows

(2015) W. M. Zinzow-Kramer et al.   GENES BRAIN AND BEHAVIOR

Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod ( Gadus morhua L.)

(2015) Paul R. Berg et al.   Genome Biology and Evolution

Genomic evidence for role of inversion3RPofDrosophila melanogasterin facilitating climate change adaptation

(2015) Rahul V. Rane et al.   MOLECULAR ECOLOGY

Chromosome inversions, adaptive cassettes and the evolution of species' ranges

(2015) Mark Kirkpatrick et al.   MOLECULAR ECOLOGY

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

(2015) Wolfgang Stephan   MOLECULAR ECOLOGY

Whole-genome resequencing uncovers molecular signatures of natural and sexual selection in wild bighorn sheep

(2015) Marty Kardos et al.   MOLECULAR ECOLOGY

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

(2015) Nicola J. Barson et al.   NATURE

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

(2015) Hideki Nishikawa et al.   NATURE GENETICS

A supergene determines highly divergent male reproductive morphs in the ruff

(2015) Clemens Küpper et al.   NATURE GENETICS

Variation in spawning time promotes genetic variability in population responses to environmental change in a marine fish

(2015) Rebekah A. Oomen et al.   Conservation Physiology

New insights into the hormonal and behavioural correlates of polymorphism in white-throated sparrows, Zonotrichia albicollis

(2014) Brent M. Horton et al.   ANIMAL BEHAVIOUR

Supergenes and Complex Phenotypes

(2014) Tanja Schwander et al.   CURRENT BIOLOGY

LOCAL ADAPTATION AND THE EVOLUTION OF CHROMOSOME FUSIONS

(2014) Rafael F. Guerrero et al.   EVOLUTION

The Effect of Linkage on Establishment and Survival of Locally Beneficial Mutations

(2014) Simon Aeschbacher et al.   GENETICS

Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar)

(2014) Susan E. Johnston et al.   MOLECULAR ECOLOGY

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Rapid parallel evolution of standing variation in a single, complex, genomic region is associated with life history in steelhead/rainbow trout

(2014) D. E. Pearse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mechanisms of reef coral resistance to future climate change

(2014) S. R. Palumbi et al.   SCIENCE

The Population Genetics of Evolutionary Rescue

(2014) H. Allen Orr et al.   PLoS Genetics

Adaptation through chromosomal inversions in Anopheles

(2014) Diego Ayala et al.   Frontiers in Genetics

An evaluation of a novel estimator of linkage disequilibrium

(2013) D Gianola et al.   HEREDITY

The consequences of gene flow for local adaptation and differentiation: a two-locus two-deme model

(2013) Ada Akerman et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Life history trade-offs at a single locus maintain sexually selected genetic variation

(2013) Susan E. Johnston et al.   NATURE

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A century after Fisher: time for a new paradigm in quantitative genetics

(2013) Ronald M. Nelson et al.   TRENDS IN GENETICS

Gene alterations at Drosophila inversion breakpoints provide prima facie evidence for natural selection as an explanation for rapid chromosomal evolution

(2012) Yolanda Guillén et al.   BMC GENOMICS

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Consequences of fisheries-induced evolution for population productivity and recovery potential

(2012) A. Kuparinen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT

(2011) Sam Yeaman et al.   EVOLUTION

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry

(2011) Mathieu Joron et al.   NATURE

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

(2011) R. D. Reed et al.   SCIENCE

The effects of linkage and gene flow on local adaptation: A two-locus continent–island model

(2011) Reinhard Bürger et al.   THEORETICAL POPULATION BIOLOGY

Determination of Onset of Sexual Maturation and Mating Behavior by Melanocortin Receptor 4 Polymorphisms

(2010) Kathrin P. Lampert et al.   CURRENT BIOLOGY

Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature

(2010) I. R. Bradbury et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

(2010) David B. Lowry et al.   PLOS BIOLOGY

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Towards a comprehensive structural variation map of an individual human genome

(2010) Andy W Pang et al.   GENOME BIOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

(2008) Ary A. Hoffmann et al.   Annual Review of Ecology Evolution and Systematics

SELECTION IN HETEROGENEOUS ENVIRONMENTS MAINTAINS THE GENE ARRANGEMENT POLYMORPHISM OFDROSOPHILA PSEUDOOBSCURA

(2008) Stephen W. Schaeffer   EVOLUTION

The Chromosomal Polymorphism Linked to Variation in Social Behavior in the White-Throated Sparrow (Zonotrichia albicollis) Is a Complex Rearrangement and Suppressor of Recombination

(2008) J. W. Thomas et al.   GENETICS