Pan-Tetris: an interactive visualisation for Pan-genomes

PanGP: A tool for quickly analyzing bacterial pan-genome profile

(2014) Yongbing Zhao et al.   BIOINFORMATICS

inPHAP: Interactive visualization of genotype and phased haplotype data

(2014) Günter Jäger et al.   BMC BIOINFORMATICS

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

(2014) Ying-hui Li et al.   NATURE BIOTECHNOLOGY

Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies

(2013) Masayuki Sugawara et al.   GENOME BIOLOGY

iHAT: interactive Hierarchical Aggregation Table for Genetic Association Data

(2012) Julian Heinrich et al.   BMC BIOINFORMATICS

PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species

(2012) Derrick E. Fouts et al.   NUCLEIC ACIDS RESEARCH

TIGRFAMs and Genome Properties in 2013

(2012) Daniel H. Haft et al.   NUCLEIC ACIDS RESEARCH

PGAP: pan-genomes analysis pipeline

(2011) Yongbing Zhao et al.   BIOINFORMATICS

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

(2009) Jochen Blom et al.   BMC BIOINFORMATICS

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

The genome BLASTatlas—a GeneWiz extension for visualization of whole-genome homology

(2008) Peter F. Hallin et al.   Molecular BioSystems