Determining minimum set of driver nodes in protein-protein interaction networks

Structurally robust control of complex networks

(2015) Jose C. Nacher et al.   PHYSICAL REVIEW E

Detecting temporal protein complexes from dynamic protein-protein interaction networks

(2014) Le Ou-Yang et al.   BMC BIOINFORMATICS

A Proteome-Scale Map of the Human Interactome Network

(2014) Thomas Rolland et al.   CELL

Controllability in protein interaction networks

(2014) S. Wuchty   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrating protein-protein interaction networks with phenotypes reveals signs of interactions

(2013) Arunachalam Vinayagam et al.   NATURE METHODS

Observability of complex systems

(2013) Y.-Y. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural controllability of unidirectional bipartite networks

(2013) Jose C. Nacher et al.   Scientific Reports

From Hub Proteins to Hub Modules: The Relationship Between Essentiality and Centrality in the Yeast Interactome at Different Scales of Organization

(2013) Jimin Song et al.   PLoS Computational Biology

From Mouse to Human: Evolutionary Genomics Analysis of Human Orthologs of Essential Genes

(2013) Benjamin Georgi et al.   PLoS Genetics

HINT: High-quality protein interactomes and their applications in understanding human disease

(2012) Jishnu Das et al.   BMC Systems Biology

A Census of Human Soluble Protein Complexes

(2012) Pierre C. Havugimana et al.   CELL

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

(2012) Orit Rozenblatt-Rosen et al.   NATURE

Transcription factors: from enhancer binding to developmental control

(2012) François Spitz et al.   NATURE REVIEWS GENETICS

Dominating scale-free networks with variable scaling exponent: heterogeneous networks are not difficult to control

(2012) Jose C Nacher et al.   NEW JOURNAL OF PHYSICS

Human Ageing Genomic Resources: Integrated databases and tools for the biology and genetics of ageing

(2012) Robi Tacutu et al.   NUCLEIC ACIDS RESEARCH

Identifying Controlling Nodes in Neuronal Networks in Different Scales

(2012) Yang Tang et al.   PLoS One

Viral Perturbations of Host Networks Reflect Disease Etiology

(2012) Natali Gulbahce et al.   PLoS Computational Biology

Multifunctional proteins revealed by overlapping clustering in protein interaction network

(2011) Emmanuelle Becker et al.   BIOINFORMATICS

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms

(2011) Xiao-Fei Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Complex networks: Degrees of control

(2011) Magnus Egerstedt   NATURE

Few inputs can reprogram biological networks

(2011) Franz-Josef Müller et al.   NATURE

Controllability of complex networks

(2011) Yang-Yu Liu et al.   NATURE

The Impact of Multifunctional Genes on "Guilt by Association" Analysis

(2011) Jesse Gillis et al.   PLoS One

Dominating Biological Networks

(2011) Tijana Milenković et al.   PLoS One

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

Centrality measures and the importance of generalist species in pollination networks

(2009) Ana M. Martín González et al.   Ecological Complexity

VirusMINT: a viral protein interaction database

(2008) A. Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes

(2008) R. Zhang et al.   NUCLEIC ACIDS RESEARCH

Null mutations in human and mouse orthologs frequently result in different phenotypes

(2008) B.-Y. Liao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology