Reductive Evolution and Diversification of C5-Uracil Methylation in the Nucleic Acids of Mollicutes

Large-Scale Analysis of the Mycoplasma bovis Genome Identified Non-essential, Adhesion- and Virulence-Related Genes

(2019) Christoph Josi et al.   Frontiers in Microbiology

Additional functions of selected proteins involved in DNA repair

(2019) Vlada Koliadenko et al.   FREE RADICAL BIOLOGY AND MEDICINE

Unique Features and Anti-microbial Targeting of Folate- and Flavin-Dependent Methyltransferases Required for Accurate Maintenance of Genetic Information

(2018) Hannu Myllykallio et al.   Frontiers in Microbiology

Convergent Evolution among Ruminant-Pathogenic Mycoplasma Involved Extensive Gene Content Changes

(2018) Wen-Sui Lo et al.   Genome Biology and Evolution

TrmFO, a Fibronectin-Binding Adhesin of Mycoplasma bovis

(2017) Yongpeng Guo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of the TyrOH•+ Radical Cation in the Flavoenzyme TrmFO

(2017) Lipsa Nag et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

MODOMICS: a database of RNA modification pathways. 2017 update

(2017) Pietro Boccaletto et al.   NUCLEIC ACIDS RESEARCH

Persistence of Functional Protein Domains in Mycoplasma Species and their Role in Host Specificity and Synthetic Minimal Life

(2017) Tjerko Kamminga et al.   Frontiers in Cellular and Infection Microbiology

Intersubunit Bridges of the Bacterial Ribosome

(2016) Qi Liu et al.   JOURNAL OF MOLECULAR BIOLOGY

Flavin-Dependent Methylation of RNAs: Complex Chemistry for a Simple Modification

(2016) Djemel Hamdane et al.   JOURNAL OF MOLECULAR BIOLOGY

The SWISS-MODEL Repository—new features and functionality

(2016) Stefan Bienert et al.   NUCLEIC ACIDS RESEARCH

An unprecedented mechanism of nucleotide methylation in organisms containing thyX

(2016) T. V. Mishanina et al.   SCIENCE

Design and synthesis of a minimal bacterial genome

(2016) C. A. Hutchison et al.   SCIENCE

An unusual UMP C-5 methylase in nucleoside antibiotic polyoxin biosynthesis

(2016) Wenqing Chen et al.   Protein & Cell

Flavin–Protein Complexes: Aromatic Stacking Assisted by a Hydrogen Bond

(2015) Djemel Hamdane et al.   BIOCHEMISTRY

What do we know about ribosomal RNA methylation in Escherichia coli?

(2015) O.V. Sergeeva et al.   BIOCHIMIE

Quality Control Pathways for Nucleus-Encoded Eukaryotic tRNA Biosynthesis and Subcellular Trafficking

(2015) Anita K. Hopper et al.   MOLECULAR AND CELLULAR BIOLOGY

An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies

(2015) Mohit Chawla et al.   NUCLEIC ACIDS RESEARCH

RlmCD-mediated U747 methylation promotes efficient G748 methylation by methyltransferase RlmAIIin 23S rRNA inStreptococcus pneumoniae; interplay between two rRNA methylations responsible for telithromycin susceptibility

(2015) Tatsuma Shoji et al.   NUCLEIC ACIDS RESEARCH

Diversity in mechanism and function of tRNA methyltransferases

(2015) William E Swinehart et al.   RNA Biology

Detection of Intermediates in the Oxidative Half-Reaction of the FAD-Dependent Thymidylate Synthase from Thermotoga maritima: Carbon Transfer without Covalent Pyrimidine Activation

(2014) John A. Conrad et al.   BIOCHEMISTRY

The flavoprotein Mcap0476 (RlmFO) catalyzes m5U1939 modification inMycoplasma capricolum23S rRNA

(2014) Carole Lartigue et al.   NUCLEIC ACIDS RESEARCH

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data

(2014) Ikuo Uchiyama et al.   NUCLEIC ACIDS RESEARCH

Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes

(2014) Henri Grosjean et al.   PLoS Genetics

Methylated nucleosides in tRNA and tRNA methyltransferases

(2014) Hiroyuki Hori   Frontiers in Genetics

Activation of a Unique Flavin-Dependent tRNA-Methylating Agent

(2013) Djemel Hamdane et al.   BIOCHEMISTRY

RNA-methyltransferase TrmA is a dual-specific enzyme responsible forC5-methylation of uridine in both tmRNA and tRNA

(2013) Ehsan Ranaei-Siadat et al.   RNA Biology

FAD/Folate-Dependent tRNA Methyltransferase: Flavin as a New Methyl-Transfer Agent

(2012) Djemel Hamdane et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Comparative Analysis of Gene Content Evolution in Phytoplasmas and Mycoplasmas

(2012) Ling-Ling Chen et al.   PLoS One

The yeast rapid tRNA decay pathway primarily monitors the structural integrity of the acceptor and T-stems of mature tRNA

(2011) J. M. Whipple et al.   GENES & DEVELOPMENT

Insights into Folate/FAD-dependent tRNA Methyltransferase Mechanism

(2011) Djemel Hamdane et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A single methyltransferase YefA (RlmCD) catalyses both m5U747 and m5U1939 modifications in Bacillus subtilis 23S rRNA

(2011) Benoit Desmolaize et al.   NUCLEIC ACIDS RESEARCH

RNA nucleotide methylation

(2011) Yuri Motorin et al.   Wiley Interdisciplinary Reviews-RNA

tRNA Stabilization by Modified Nucleotides

(2010) Yuri Motorin et al.   BIOCHEMISTRY

Specificity and kinetics of 23S rRNA modification enzymes RlmH and RluD

(2010) R. Ero et al.   RNA

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Stereochemical mechanisms of tRNA methyltransferases

(2009) Ya-Ming Hou et al.   FEBS LETTERS

YgdE is the 2′-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA

(2009) Elzbieta Purta et al.   MOLECULAR MICROBIOLOGY

Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase

(2009) H. Nishimasu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of 8-methyladenosine as the modification catalyzed by the radical SAM methyltransferase Cfr that confers antibiotic resistance in bacteria

(2009) A. M. B. Giessing et al.   RNA

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH

Identification of pseudouridine methyltransferase in Escherichia coli

(2008) R. Ero et al.   RNA

YbeA is the m3  methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA

(2008) E. Purta et al.   RNA