Comparing the Performance of Microsatellites and RADseq in Population Genetic Studies: Analysis of Data for Pike (Esox lucius) and a Synthesis of Previous Studies

Comparing inferences derived from microsatellite and RADseq datasets: a case study involving threatened bull trout

(2019) Justin Bohling et al.   CONSERVATION GENETICS

Comparing RADseq and microsatellites for estimating genetic diversity and relatedness — Implications for brown trout conservation

(2019) Alexandre Lemopoulos et al.   Ecology and Evolution

Predator‐prey role reversal may impair the recovery of declining pike populations

(2019) Jonas Nilsson et al.   JOURNAL OF ANIMAL ECOLOGY

Adaptations of early development to local spawning temperature in anadromous populations of pike (Esox lucius)

(2019) Johanna Sunde et al.   BMC EVOLUTIONARY BIOLOGY

Genetic differentiation between and within ecotypes of pike ( Esox lucius ) in the Baltic Sea

(2019) Oscar Nordahl et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Genetic population structure of the round whitefish (Prosopium cylindraceum) in North America: multiple markers reveal glacial refugia and regional subdivision

(2018) Thomas D. Morgan et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Population genomics of the introduced and cultivated Pacific kelp Undaria pinnatifida : Marinas-not farms-drive regional connectivity and establishment in natural rocky reefs

(2018) Jaromir Guzinski et al.   Evolutionary Applications

Genotyping-by-sequencing of genome-wide microsatellite loci reveals fine-scale harvest composition in a coastal Atlantic salmon fishery

(2018) Ian R. Bradbury et al.   Evolutionary Applications

Microsatellite diversity of a critically endangered sturgeon, Acipenser sturio L. 1758, assessed from museum and archaeological tissue remains

(2018) Olivier Chassaing et al.   JOURNAL OF BIOGEOGRAPHY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Variation in salinity tolerance between and within anadromous subpopulations of pike (Esox lucius)

(2018) Johanna Sunde et al.   Scientific Reports

A One-Penny Imputed Genome from Next-Generation Reference Panels

(2018) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand

(2018) Yeşerin Yıldırım et al.   PLoS One

Sex-specific effects of outbreeding on offspring quality in pike (Esox lucius )

(2018) Johanna Sunde et al.   Ecology and Evolution

Contrasting patterns of neutral and functional genetic diversity in stable and disturbed environments

(2018) Yeşerin Yıldırım et al.   Ecology and Evolution

Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species

(2017) Alison G. Nazareno et al.   Molecular Ecology Resources

Deriving genotypes from RAD-seq short-read data using Stacks

(2017) Nicolas C Rochette et al.   Nature Protocols

A cross-scale trophic cascade from large predatory fish to algae in coastal ecosystems

(2017) S. Donadi et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

RAD sequencing resolves fine-scale population structure in a benthic invertebrate: implications for understanding phenotypic plasticity

(2017) David L. J. Vendrami et al.   Royal Society Open Science

Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering

(2017) Richard G. J. Hodel et al.   Scientific Reports

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Population genetics from 1966 to 2016

(2016) B Charlesworth et al.   HEREDITY

Comparing RADseq and microsatellites to infer complex phylogeographic patterns, an empirical perspective in the Crucian carp,Carassius carassius,L.

(2016) Daniel L. Jeffries et al.   MOLECULAR ECOLOGY

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Causes and consequences of intra-specific variation in vertebral number

(2016) Petter Tibblin et al.   Scientific Reports

Testing for Local Adaptation to Spawning Habitat in Sympatric Subpopulations of Pike by Reciprocal Translocation of Embryos

(2016) Hanna Berggren et al.   PLoS One

Ecology, evolution, and management strategies of northern pike populations in the Baltic Sea

(2015) Per Larsson et al.   AMBIO

Evolutionary Divergence of Adult Body Size and Juvenile Growth in Sympatric Subpopulations of a Top Predator in Aquatic Ecosystems

(2015) Petter Tibblin et al.   AMERICAN NATURALIST

Signatures of natural selection between life cycle stages separated by metamorphosis in European eel

(2015) J. M. Pujolar et al.   BMC GENOMICS

Genetic isolation by distance reveals restricted dispersal across a range of life histories: implications for biodiversity conservation planning across highly variable marine environments

(2015) Daniel Wright et al.   DIVERSITY AND DISTRIBUTIONS

Causes and consequences of repeatability, flexibility and individual fine-tuning of migratory timing in pike

(2015) Petter Tibblin et al.   JOURNAL OF ANIMAL ECOLOGY

PikeEsox luciusas an emerging model organism for studies in ecology and evolutionary biology: a review

(2015) A. Forsman et al.   JOURNAL OF FISH BIOLOGY

Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes

(2015) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Integration of Random Forest with population-based outlier analyses provides insight on the genomic basis and evolution of run timing in Chinook salmon (Oncorhynchus tshawytscha)

(2015) Marine S. O. Brieuc et al.   MOLECULAR ECOLOGY

Transatlantic secondary contact in Atlantic Salmon, comparing microsatellites, a single nucleotide polymorphism array and restriction-site associated DNA sequencing for the resolution of complex spatial structure

(2015) Ian R. Bradbury et al.   MOLECULAR ECOLOGY

Shared and nonshared genomic divergence in parallel ecotypes ofLittorina saxatilisat a local scale

(2015) Mark Ravinet et al.   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)

(2015) Carly F. Graham et al.   Molecular Ecology Resources

A new FST-based method to uncover local adaptation using environmental variables

(2015) Pierre de Villemereuil et al.   Methods in Ecology and Evolution

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

From regionally predictable to locally complex population structure in a freshwater top predator: river systems are not always the unit of connectivity in Northern PikeEsox lucius

(2014) Dorte Bekkevold et al.   ECOLOGY OF FRESHWATER FISH

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Population genomics of parallel hybrid zones in the mimetic butterflies,H. melpomeneandH. erato

(2014) Nicola J. Nadeau et al.   GENOME RESEARCH

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei

(2014) Eric B. Rondeau et al.   PLoS One

Phylogeography of the California Gnatcatcher (Polioptila californica) using multilocus DNA sequences and ecological niche modeling

(2013) Robert M. Zink et al.   AUK

Elemental fingerprinting in otoliths reveals natal homing of anadromous Baltic Sea pike (Esox luciusL.)

(2013) Olof Engstedt et al.   ECOLOGY OF FRESHWATER FISH

Population genetic variation in the New Zealand greenshell mussel: locus-dependent conflicting signals of weak structure and high gene flow balanced against pronounced structure and high self-recruitment

(2013) Kaijian Wei et al.   MARINE BIOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Effects of genotypic and phenotypic variation on establishment are important for conservation, invasion, and infection biology

(2013) A. Forsman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ezRAD: a simplified method for genomic genotyping in non-model organisms

(2013) Robert J. Toonen et al.   PeerJ

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Sampling for Microsatellite-Based Population Genetic Studies: 25 to 30 Individuals per Population Is Enough to Accurately Estimate Allele Frequencies

(2012) Marie L. Hale et al.   PLoS One

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Assessment of natal origin of pike (Esox lucius) in the Baltic Sea using Sr:Ca in otoliths

(2010) Olof Engstedt et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Recruitment failure of coastal predatory fish in the Baltic Sea coincident with an offshore ecosystem regime shift

(2010) L. Ljunggren et al.   ICES JOURNAL OF MARINE SCIENCE

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Potential reasons for the changes in the abundance of pike,Esox lucius, in the western Gulf of Finland, 1939-2007

(2009) H. LEHTONEN et al.   FISHERIES MANAGEMENT AND ECOLOGY

Microsatellites Are Molecular Clocks That Support Accurate Inferences about History

(2009) J. X. Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

A quantitative review of heterozygosity-fitness correlations in animal populations

(2009) J. R. CHAPMAN et al.   MOLECULAR ECOLOGY

Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008

(2009) SCOTT EDWARDS et al.   MOLECULAR ECOLOGY

The dangers of ignoring stock complexity in fishery management: the case of the North Sea cod

(2008) W. F. Hutchinson   Biology Letters

Ecological consequences of genetic diversity

(2008) A. Randall Hughes et al.   ECOLOGY LETTERS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One