Discovery of novel hepatocyte eQTLs in African Americans

The thanatotranscriptome: Gene expression of male reproductive organs after death

(2018) Mariah Tolbert et al.   GENE

A large electronic-health-record-based genome-wide study of serum lipids

(2018) Thomas J. Hoffmann et al.   NATURE GENETICS

Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation

(2018) Eric R. Gamazon et al.   NATURE GENETICS

Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases

(2018) Masahiro Kanai et al.   NATURE GENETICS

The effects of death and post-mortem cold ischemia on human tissue transcriptomes

(2018) Pedro G. Ferreira et al.   Nature Communications

A mega-analysis of expression quantitative trait loci (eQTL) provides insight into the regulatory architecture of gene expression variation in liver

(2018) Tobias Strunz et al.   Scientific Reports

Genetic architecture of gene expression traits across diverse populations

(2018) Lauren S. Mogil et al.   PLoS Genetics

Cardiovascular Pharmacogenomics: Does It Matter If You're Black or White?

(2018) Tanima De et al.   Annual Review of Pharmacology and Toxicology

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

(2018) Sonya A. MacParland et al.   Nature Communications

Conditional eQTL analysis reveals allelic heterogeneity of gene expression

(2017) Rick Jansen et al.   HUMAN MOLECULAR GENETICS

Genetic effects on gene expression across human tissues

(2017) François Aguet et al.   NATURE

Population- and individual-specific regulatory variation in Sardinia

(2017) Mauro Pala et al.   NATURE GENETICS

Estimating the causal tissues for complex traits and diseases

(2017) Halit Ongen et al.   NATURE GENETICS

Prioritizing diversity in human genomics research

(2017) Lucia A. Hindorff et al.   NATURE REVIEWS GENETICS

A complete tool set for molecular QTL discovery and analysis

(2017) Olivier Delaneau et al.   Nature Communications

Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations

(2017) Sarah Kim-Hellmuth et al.   Nature Communications

Systematic analysis of gene expression patterns associated with postmortem interval in human tissues

(2017) Yizhang Zhu et al.   Scientific Reports

TreeQTL: hierarchical error control for eQTL findings

(2016) C. B. Peterson et al.   BIOINFORMATICS

Novel genetic predictors of venous thromboembolism risk in African Americans

(2016) W. Hernandez et al.   BLOOD

Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens

(2016) Yohann Nédélec et al.   CELL

Mapping adipose and muscle tissue expression quantitative trait loci in African Americans to identify genes for type 2 diabetes and obesity

(2016) Satria P. Sajuthi et al.   HUMAN GENETICS

Genomics is failing on diversity

(2016) Alice B. Popejoy et al.   NATURE

g:Profiler—a web server for functional interpretation of gene lists (2016 update)

(2016) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

The Great Migration and African-American Genomic Diversity

(2016) Soheil Baharian et al.   PLoS Genetics

Massively parallel quantification of the regulatory effects of noncoding genetic variation in a human cohort

(2015) Christopher M. Vockley et al.   GENOME RESEARCH

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

(2015) Brendan K Bulik-Sullivan et al.   NATURE GENETICS

The role of regulatory variation in complex traits and disease

(2015) Frank W. Albert et al.   NATURE REVIEWS GENETICS

Genomic modulators of gene expression in human neutrophils

(2015) Vivek Naranbhai et al.   Nature Communications

Genome-Wide Association Studies in Africans and African Americans: Expanding the Framework of the Genomics of Human Traits and Disease

(2015) Emmanuel Peprah et al.   Public Health Genomics

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Identifying Causal Variants at Loci with Multiple Signals of Association

(2014) F. Hormozdiari et al.   GENETICS

Mapping of hepatic expression quantitative trait loci (eQTLs) in a Han Chinese population

(2014) Xiaoliang Wang et al.   JOURNAL OF MEDICAL GENETICS

Innate Immune Activity Conditions the Effect of Regulatory Variants upon Monocyte Gene Expression

(2014) B. P. Fairfax et al.   SCIENCE

Hepatocyte nuclear factor 4-alpha involvement in liver and intestinal inflammatory networks

(2014) Jean-Philippe Babeu   WORLD JOURNAL OF GASTROENTEROLOGY

Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics

(2014) Claudia Giambartolomei et al.   PLoS Genetics

RFMix: A Discriminative Modeling Approach for Rapid and Robust Local-Ancestry Inference

(2013) Brian K. Maples et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis

(2013) Nicolas Greliche et al.   BMC Medical Genetics

Histone modifications for human epigenome analysis

(2013) Hiroshi Kimura   JOURNAL OF HUMAN GENETICS

Genetic variants associated with warfarin dose in African-American individuals: a genome-wide association study

(2013) Minoli A Perera et al.   LANCET

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

(2013) Danielle Welter et al.   NUCLEIC ACIDS RESEARCH

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

(2012) A. A. Shabalin   BIOINFORMATICS

RNA-SeQC: RNA-seq metrics for quality control and process optimization

(2012) David S. DeLuca et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

PharmGKB summary

(2012) Jatinder Lamba et al.   Pharmacogenetics and Genomics

Patterns of Cis Regulatory Variation in Diverse Human Populations

(2012) Barbara E. Stranger et al.   PLoS Genetics

Pharmacogenomics

(2011) Dan M. Roden et al.   CIRCULATION

A linear complexity phasing method for thousands of genomes

(2011) Olivier Delaneau et al.   NATURE METHODS

Identification, Replication, and Functional Fine-Mapping of Expression Quantitative Trait Loci in Primary Human Liver Tissue

(2011) Federico Innocenti et al.   PLoS Genetics

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genetic Variants Influencing Circulating Lipid Levels and Risk of Coronary Artery Disease

(2010) Dawn M. Waterworth et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Regulation of M3 Muscarinic Receptor Expression and Function by Transmembrane Protein 147

(2010) E. Rosemond et al.   MOLECULAR PHARMACOLOGY

From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus

(2010) Kiran Musunuru et al.   NATURE

VKORC1 Pharmacogenomics Summary

(2010) Ryan P. Owen et al.   Pharmacogenetics and Genomics

A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies

(2010) Oliver Stegle et al.   PLoS Computational Biology

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

High platelet count associated with venous thromboembolism in cancer patients: results from the Vienna Cancer and Thrombosis Study (CATS)

(2009) R. SIMANEK et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

Effects of race and ethnicity on the incidence of venous thromboembolism

(2009) Richard H. White et al.   THROMBOSIS RESEARCH

Evaluation of Genetic Variation Contributing to Differences in Gene Expression between Populations

(2008) Wei Zhang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Glucose-6-phosphate dehydrogenase deficiency

(2008) MD Cappellini et al.   LANCET

Mapping the Genetic Architecture of Gene Expression in Human Liver

(2008) Eric E Schadt et al.   PLOS BIOLOGY