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qSVA framework for RNA quality correction in differential expression analysis

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Alternative Splicing May Not Be the Key to Proteome Complexity

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Tracing the dynamics of gene transcripts after organismal death

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Detecting Sources of Transcriptional Heterogeneity in Large-Scale RNA-Seq Data Sets

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High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes

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Detecting Sources of Transcriptional Heterogeneity in Large-Scale RNA-Seq Data Sets

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A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project

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(2015) Aaron M Newman et al.   NATURE METHODS

The human transcriptome across tissues and individuals

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The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

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A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project

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DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis

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RNA-seq: impact of RNA degradation on transcript quantification

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Sequencing Degraded RNA Addressed by 3' Tag Counting

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Studies on RNA integrity and gene expression in human myocardial tissue, pericardial fluid and blood, and its postmortem stability

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The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Profiling of RNA Degradation for Estimation of Post Morterm Interval

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Effects of Warm Ischemic Time on Gene Expression Profiling in Colorectal Cancer Tissues and Normal Mucosa

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Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene

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Intron-centric estimation of alternative splicing from RNA-seq data

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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GENCODE: The reference human genome annotation for The ENCODE Project

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clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

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RNA integrity in post-mortem samples: influencing parameters and implications on RT-qPCR assays

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Whole-exome sequencing for finding de novo mutations in sporadic mental retardation

(2011) Peter N Robinson   GENOME BIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

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Postmortem interval effect on RNA and gene expression in human brain tissue

(2010) Alex C. Birdsill et al.   CELL AND TISSUE BANKING

Analysis of mRNA from human heart tissue and putative applications in forensic molecular pathology

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mRNA profiling in forensic genetics I: Possibilities and limitations

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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The Many Pathways of RNA Degradation

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Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS