ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms
出版年份 2020 全文链接
标题
ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms
作者
关键词
-
出版物
Nature Communications
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-05-11
DOI
10.1038/s41467-020-16174-z
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- RNA sequencing: the teenage years
- (2019) Rory Stark et al. NATURE REVIEWS GENETICS
- High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes
- (2019) Mandeep Singh et al. Nature Communications
- SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
- (2018) Manuel Tardaguila et al. GENOME RESEARCH
- UniProt: the universal protein knowledgebase
- (2018) The UniProt Consortium NUCLEIC ACIDS RESEARCH
- Universal Alternative Splicing of Noncoding Exons
- (2018) Ira W. Deveson et al. Cell Systems
- Transcriptional fates of human-specific segmental duplications in brain
- (2018) Max L. Dougherty et al. GENOME RESEARCH
- Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA
- (2018) Roger Volden et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The UCSC Genome Browser database: 2019 update
- (2018) Maximilian Haeussler et al. NUCLEIC ACIDS RESEARCH
- Annotation-free quantification of RNA splicing using LeafCutter
- (2017) Yang I. Li et al. NATURE GENETICS
- High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing
- (2017) Julien Lagarde et al. NATURE GENETICS
- Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
- (2016) Heng Li BIOINFORMATICS
- Targeted capture and sequencing of gene-sized DNA molecules
- (2016) Michael Giolai et al. BIOTECHNIQUES
- Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing
- (2016) Xinping Yang et al. CELL
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Accelerated cloning of a potato late blight–resistance gene using RenSeq and SMRT sequencing
- (2016) Kamil Witek et al. NATURE BIOTECHNOLOGY
- The ORFeome Collaboration: a genome-scale human ORF-clone resource
- (2016) NATURE METHODS
- Translating RNA sequencing into clinical diagnostics: opportunities and challenges
- (2016) Sara A. Byron et al. NATURE REVIEWS GENETICS
- The state of play in higher eukaryote gene annotation
- (2016) Jonathan M. Mudge et al. NATURE REVIEWS GENETICS
- Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation
- (2015) Junbai Wang et al. BMC GENOMICS
- Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events
- (2015) Hagen Tilgner et al. NATURE BIOTECHNOLOGY
- Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing
- (2015) Michael B Clark et al. NATURE METHODS
- TARDIS, a targeted RNA directional sequencing method for rare RNA discovery
- (2015) Maximiliano M Portal et al. Nature Protocols
- A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits
- (2015) Timokratis Karamitros et al. NUCLEIC ACIDS RESEARCH
- Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples
- (2014) Claudia Bragalini et al. DNA RESEARCH
- A promoter-level mammalian expression atlas
- (2014) NATURE
- Targeted sequencing for gene discovery and quantification using RNA CaptureSeq
- (2014) Tim R Mercer et al. Nature Protocols
- Multiplexed direct genomic selection (MDiGS): a pooled BAC capture approach for highly accurate CNV and SNP/INDEL detection
- (2014) David M. Alvarado et al. NUCLEIC ACIDS RESEARCH
- Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank)
- (2014) Kyriakos Tsangaras et al. PLoS One
- A single-molecule long-read survey of the human transcriptome
- (2013) Donald Sharon et al. NATURE BIOTECHNOLOGY
- Assessment of transcript reconstruction methods for RNA-seq
- (2013) Tamara Steijger et al. NATURE METHODS
- Function of alternative splicing
- (2012) Olga Kelemen et al. GENE
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- APPRIS: annotation of principal and alternative splice isoforms
- (2012) Jose Manuel Rodriguez et al. NUCLEIC ACIDS RESEARCH
- Exome RNA sequencing reveals rare and novel alternative transcripts
- (2012) Jonatan Halvardson et al. NUCLEIC ACIDS RESEARCH
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- High-throughput resequencing of target-captured cDNA in cancer cells
- (2011) Toshihide Ueno et al. CANCER SCIENCE
- Synthetic spike-in standards for RNA-seq experiments
- (2011) L. Jiang et al. GENOME RESEARCH
- Targeted RNA sequencing reveals the deep complexity of the human transcriptome
- (2011) Tim R Mercer et al. NATURE BIOTECHNOLOGY
- Target-enrichment strategies for next-generation sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products
- (2010) Tomislav Maricic et al. PLoS One
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Detection of nonneutral substitution rates on mammalian phylogenies
- (2009) K. S. Pollard et al. GENOME RESEARCH
- Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
- (2009) Andreas Gnirke et al. NATURE BIOTECHNOLOGY
- Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
- (2009) Joshua Z Levin et al. GENOME BIOLOGY
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing
- (2008) Kourosh Salehi-Ashtiani et al. NATURE METHODS
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