Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events
出版年份 2015 全文链接
标题
Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events
作者
关键词
-
出版物
NATURE BIOTECHNOLOGY
Volume 33, Issue 7, Pages 736-742
出版商
Springer Nature
发表日期
2015-05-18
DOI
10.1038/nbt.3242
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Widespread intron retention in mammals functionally tunes transcriptomes
- (2014) Ulrich Braunschweig et al. GENOME RESEARCH
- Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study
- (2014) Sheng Li et al. NATURE BIOTECHNOLOGY
- Whole-genome haplotyping using long reads and statistical methods
- (2014) Volodymyr Kuleshov et al. NATURE BIOTECHNOLOGY
- Alternative splicing in cancer: implications for biology and therapy
- (2014) J Chen et al. ONCOGENE
- High-Resolution Transcriptome Analysis with Long-Read RNA Sequencing
- (2014) Hyunghoon Cho et al. PLoS One
- Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements
- (2014) Rajiv C. McCoy et al. PLoS One
- Defining a personal, allele-specific, and single-molecule long-read transcriptome
- (2014) Hagen Tilgner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A single-molecule long-read survey of the human transcriptome
- (2013) Donald Sharon et al. NATURE BIOTECHNOLOGY
- Assessment of transcript reconstruction methods for RNA-seq
- (2013) Tamara Steijger et al. NATURE METHODS
- Alternative splicing: a pivotal step between eukaryotic transcription and translation
- (2013) Alberto R. Kornblihtt et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The UCSC Genome Browser database: 2014 update
- (2013) Donna Karolchik et al. NUCLEIC ACIDS RESEARCH
- Characterization of the human ESC transcriptome by hybrid sequencing
- (2013) K. F. Au et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accurate Identification and Analysis of Human mRNA Isoforms Using Deep Long Read Sequencing
- (2013) Hagen Tilgner et al. G3-Genes Genomes Genetics
- Transcriptional elongation and alternative splicing
- (2012) Gwendal Dujardin et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- (2012) H. Tilgner et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- The spliceosome as a target of novel antitumour drugs
- (2012) Sophie Bonnal et al. NATURE REVIEWS DRUG DISCOVERY
- Single-Molecule Imaging of Transcriptionally Coupled and Uncoupled Splicing
- (2011) Diana Y. Vargas et al. CELL
- Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons
- (2010) Fernando Carrillo Oesterreich et al. MOLECULAR CELL
- Deciphering the splicing code
- (2010) Yoseph Barash et al. NATURE
- Expansion of the eukaryotic proteome by alternative splicing
- (2010) Timothy W. Nilsen et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- SF2/ASF autoregulation involves multiple layers of post-transcriptional and translational control
- (2010) Shuying Sun et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
- (2008) Brian T. Wilhelm et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
- (2008) U. Nagalakshmi et al. SCIENCE
- A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
- (2008) M. Sultan et al. SCIENCE
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More