Multilocus phylogeny and systematics of Iberian endemic Squalius (Actinopterygii, Leuciscidae)
出版年份 2020 全文链接
标题
Multilocus phylogeny and systematics of Iberian endemic Squalius
(Actinopterygii, Leuciscidae)
作者
关键词
-
出版物
ZOOLOGICA SCRIPTA
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2020-04-27
DOI
10.1111/zsc.12420
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Evaluation of potential hybridization between native fishes and the invasive bleak, Alburnus alburnus (Actinopterygii: Cypriniformes: Cyprinidae)
- (2018) Carla Sousa-Santos et al. ACTA ICHTHYOLOGICA ET PISCATORIA
- Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
- (2018) Heather Rose Kates et al. AMERICAN JOURNAL OF BOTANY
- Multilocus phylogeny and coalescent species delimitation in Kotschy's gecko, Mediodactylus kotschyi : Hidden diversity and cryptic species
- (2018) Panayiota Kotsakiozi et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Fish diversification at the pace of geomorphological changes: evolutionary history of western Iberian Leuciscinae (Teleostei: Leuciscidae) inferred from multilocus sequence data
- (2018) C. Sousa-Santos et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Bidirectional mitochondrial introgression between Korean cobitid fish mediated by hybridogenetic hybrids
- (2018) Ye-Seul Kwan et al. Ecology and Evolution
- Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)
- (2017) Clément Rougeux et al. Genome Biology and Evolution
- In the shadows: Phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata: Tropidurus )
- (2017) Fabricius M.C.B. Domingos et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae)
- (2017) J.S. Eriksson et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Multispecies coalescent delimits structure, not species
- (2017) Jeet Sukumaran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Early-branching euteleost relationships: areas of congruence between concatenation and coalescent model inferences
- (2017) Matthew A. Campbell et al. PeerJ
- Resolution of a concatenation/coalescence kerfuffle: partitioned coalescence support and a robust family-level tree for Mammalia
- (2016) John Gatesy et al. CLADISTICS
- Reversible polymorphism-aware phylogenetic models and their application to tree inference
- (2016) Dominik Schrempf et al. JOURNAL OF THEORETICAL BIOLOGY
- Cenozoic tectonic and climatic events in southern Iberian Peninsula: Implications for the evolutionary history of freshwater fish of the genus Squalius (Actinopterygii, Cyprinidae)
- (2016) Silvia Perea et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
- (2016) Scott V. Edwards et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Evaluating the phylogenetic signal limit from mitogenomes, slow evolving nuclear genes, and the concatenation approach. New insights into the Lacertini radiation using fast evolving nuclear genes and species trees
- (2016) Joana Mendes et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods
- (2016) Kelly A. Meiklejohn et al. SYSTEMATIC BIOLOGY
- Multispecies Outcomes of Sympatric Speciation after Admixture with the Source Population in Two Radiations of Nicaraguan Crater Lake Cichlids
- (2016) Andreas F. Kautt et al. PLoS Genetics
- Broad-scale sampling of primary freshwater fish populations reveals the role of intrinsic traits, inter-basin connectivity, drainage area and latitude on shaping contemporary patterns of genetic diversity
- (2016) Carla Sousa-Santos et al. PeerJ
- Ancient Mitochondrial Capture as Factor Promoting Mitonuclear Discordance in Freshwater Fishes: A Case Study in the Genus Squalius (Actinopterygii, Cyprinidae) in Greece
- (2016) Silvia Perea et al. PLoS One
- Estimating phylogenetic trees from genome-scale data
- (2015) Liang Liu et al. Annals of the New York Academy of Sciences
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- Role of genetic background in the introgressive hybridization of rainbow trout (Oncorhynchus mykiss) with Westslope cutthroat trout (O. clarkii lewisi)
- (2015) B. E. Allen et al. CONSERVATION GENETICS
- The BPP program for species tree estimation and species delimitation
- (2015) Ziheng Yang Current Zoology
- Phylogeography, historical demography and habitat suitability modelling of freshwater fishes inhabiting seasonally fluctuating Mediterranean river systems: a case study using the Iberian cyprinidSqualius valentinus
- (2015) S. Perea et al. MOLECULAR ECOLOGY
- Untangling the evolutionary history of a highly polymorphic species: introgressive hybridization and high genetic structure in the desert cichlid fishHerichtys minckleyi
- (2015) Isabel S. Magalhaes et al. MOLECULAR ECOLOGY
- When do species-tree and concatenated estimates disagree? An empirical analysis with higher-level scincid lizard phylogeny
- (2015) Shea M. Lambert et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Coalescence vs. concatenation: Sophisticated analyses vs. first principles applied to rooting the angiosperms
- (2015) Mark P. Simmons et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Comment on "Statistical binning enables an accurate coalescent-based estimation of the avian tree"
- (2015) L. Liu et al. SCIENCE
- On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods
- (2015) Sebastien Roch et al. SYSTEMATIC BIOLOGY
- Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
- (2015) Sebastien Roch et al. THEORETICAL POPULATION BIOLOGY
- The BPP program for species tree estimation and species delimitation
- (2015) Ziheng Yang Current Zoology
- Assessing Species Boundaries Using Multilocus Species Delimitation in a Morphologically Conserved Group of Neotropical Freshwater Fishes, the Poecilia sphenops Species Complex (Poeciliidae)
- (2015) Justin C. Bagley et al. PLoS One
- Spatial heterogeneity in the Mediterranean Biodiversity Hotspot affects barcoding accuracy of its freshwater fishes
- (2014) M. F. Geiger et al. Molecular Ecology Resources
- Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies
- (2014) Zhenxiang Xi et al. SYSTEMATIC BIOLOGY
- Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting
- (2014) Siavash Mirarab et al. SYSTEMATIC BIOLOGY
- Land plant origins and coalescence confusion
- (2014) Mark S. Springer et al. TRENDS IN PLANT SCIENCE
- Ignoring Heterozygous Sites Biases Phylogenomic Estimates of Divergence Times: Implications for the Evolutionary History of Microtus Voles
- (2013) Heidi E.L. Lischer et al. MOLECULAR BIOLOGY AND EVOLUTION
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Multilocus phylogeny and Bayesian estimates of species boundaries reveal hidden evolutionary relationships and cryptic diversity in Southeast Asian monitor lizards
- (2013) L. J. Welton et al. MOLECULAR ECOLOGY
- Sampling strategies for species trees: The effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal
- (2013) Ammon Corl et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Constructing Phylogenies in the Presence Of Intra-Individual Site Polymorphisms (2ISPs) with a Focus on the Nuclear Ribosomal Cistron
- (2013) Alastair J. Potts et al. SYSTEMATIC BIOLOGY
- Multilocus Species Delimitation in a Complex of Morphologically Conserved Trapdoor Spiders (Mygalomorphae, Antrodiaetidae, Aliatypus)
- (2013) Jordan D. Satler et al. SYSTEMATIC BIOLOGY
- The Influence of Gene Flow on Species Tree Estimation: A Simulation Study
- (2013) Adam D. Leaché et al. SYSTEMATIC BIOLOGY
- Computational approaches to species phylogeny inference and gene tree reconciliation
- (2013) Luay Nakhleh TRENDS IN ECOLOGY & EVOLUTION
- Origin of land plants using the multispecies coalescent model
- (2013) Bojian Zhong et al. TRENDS IN PLANT SCIENCE
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Natural hybridization with invasive bleak Alburnus alburnus threatens the survival of Iberian endemic calandino Squalius alburnoides complex and Southern Iberian chub Squalius pyrenaicus
- (2012) A. Almodóvar et al. BIOLOGICAL INVASIONS
- Concatenation and Concordance in the Reconstruction of Mouse Lemur Phylogeny: An Empirical Demonstration of the Effect of Allele Sampling in Phylogenetics
- (2012) David W. Weisrock et al. MOLECULAR BIOLOGY AND EVOLUTION
- Bayesian Phylogenetics with BEAUti and the BEAST 1.7
- (2012) Alexei J. Drummond et al. MOLECULAR BIOLOGY AND EVOLUTION
- PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
- (2012) R. Lanfear et al. MOLECULAR BIOLOGY AND EVOLUTION
- jModelTest 2: more models, new heuristics and parallel computing
- (2012) Diego Darriba et al. NATURE METHODS
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Coalescent-based species delimitation in an integrative taxonomy
- (2012) Matthew K. Fujita et al. TRENDS IN ECOLOGY & EVOLUTION
- Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
- (2012) Douglas W. Yu et al. Methods in Ecology and Evolution
- Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling
- (2011) David Gerard et al. BMC EVOLUTIONARY BIOLOGY
- What are the consequences of combining nuclear and mitochondrial data for phylogenetic analysis? Lessons from Plethodonsalamanders and 13 other vertebrate clades
- (2011) M Caitlin Fisher-Reid et al. BMC EVOLUTIONARY BIOLOGY
- COALESCENT-BASED SPECIES TREE INFERENCE FROM GENE TREE TOPOLOGIES UNDER INCOMPLETE LINEAGE SORTING BY MAXIMUM LIKELIHOOD
- (2011) Yufeng Wu EVOLUTION
- DELIMITING SPECIES USING MULTILOCUS DATA: DIAGNOSING CRYPTIC DIVERSITY IN THE SOUTHERN CAVEFISH, TYPHLICHTHYS SUBTERRANEUS (TELEOSTEI: AMBLYOPSIDAE)
- (2011) Matthew L. Niemiller et al. EVOLUTION
- Multi-locus species tree of the chub genus Squalius (Leuciscinae: Cyprinidae) from western Iberia: new insights into its evolutionary history
- (2011) Silke Waap et al. GENETICA
- Phylogenetic and Coalescent Strategies of Species Delimitation in Snubnose Darters (Percidae: Etheostoma)
- (2011) Richard C. Harrington et al. SYSTEMATIC BIOLOGY
- Inferring Species-Level Phylogenies and Taxonomic Distinctiveness Using Multilocus Data in Sistrurus Rattlesnakes
- (2011) Laura S. Kubatko et al. SYSTEMATIC BIOLOGY
- Evaluation of a Bayesian Coalescent Method of Species Delimitation
- (2011) Chi Zhang et al. SYSTEMATIC BIOLOGY
- DensiTree: making sense of sets of phylogenetic trees
- (2010) R. R. Bouckaert BIOINFORMATICS
- Phylogenetic relationships and biogeographical patterns in Circum-Mediterranean subfamily Leuciscinae (Teleostei, Cyprinidae) inferred from both mitochondrial and nuclear data
- (2010) Silvia Perea et al. BMC EVOLUTIONARY BIOLOGY
- The evolutionary history of the allopolyploid Squalius alburnoides (Cyprinidae) complex in the northern Iberian Peninsula
- (2010) C Cunha et al. HEREDITY
- The Rutilus alburnoides complex (Cyprinidae): evidence for a hybrid origin
- (2010) M. J. Alves et al. JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH
- Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
- (2010) LAURENT EXCOFFIER et al. Molecular Ecology Resources
- Comparisons of the genetic structure of Squalius populations (Teleostei, Cyprinidae) from rivers with contrasting histories, drainage areas and climatic conditions based on two molecular markers
- (2010) V. Almada et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Bayesian species delimitation using multilocus sequence data
- (2010) Z. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus)
- (2010) A. D. Leache et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- Bayesian Inference of Species Trees from Multilocus Data
- (2009) J. Heled et al. MOLECULAR BIOLOGY AND EVOLUTION
- Maximum Likelihood Estimates of Species Trees: How Accuracy of Phylogenetic Inference Depends upon the Divergence History and Sampling Design
- (2009) John E. McCormack et al. SYSTEMATIC BIOLOGY
- Phylogenetic Analysis in the Anomaly Zone
- (2009) Liang Liu et al. SYSTEMATIC BIOLOGY
- New Heuristic Methods for Joint Species Delimitation and Species Tree Inference
- (2009) Brian C. O'Meara SYSTEMATIC BIOLOGY
- Estimating Species Phylogenies Using Coalescence Times among Sequences
- (2009) Liang Liu et al. SYSTEMATIC BIOLOGY
- Gene tree discordance, phylogenetic inference and the multispecies coalescent
- (2009) James H. Degnan et al. TRENDS IN ECOLOGY & EVOLUTION
- Gene flow and species delimitation
- (2009) Rémy J. Petit et al. TRENDS IN ECOLOGY & EVOLUTION
- IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
- (2008) Scott V. Edwards EVOLUTION
- Branch Lengths, Support, and Congruence: Testing the Phylogenomic Approach with 20 Nuclear Loci in Snakes
- (2008) John J. Wiens et al. SYSTEMATIC BIOLOGY
- Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
- (2008) Chen Meng et al. THEORETICAL POPULATION BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now