IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq
出版年份 2020 全文链接
标题
IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2020-05-05
DOI
10.1093/nar/gkaa394
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis
- (2020) Yong Zhao et al. Mucosal Immunology
- PD-1/PD-L1 checkpoint blockade harnesses monocyte-derived macrophages to combat cognitive impairment in a tauopathy mouse model
- (2019) Neta Rosenzweig et al. Nature Communications
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- Single-Cell Transcriptomics Identifies the Adaptation of Scart1+ Vγ6+ T Cells to Skin Residency as Activated Effector Cells
- (2019) Likai Tan et al. Cell Reports
- Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling
- (2019) Allen W. Zhang et al. NATURE METHODS
- Data denoising with transfer learning in single-cell transcriptomics
- (2019) Jingshu Wang et al. NATURE METHODS
- Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq
- (2019) Weiqiang Zhou et al. NUCLEIC ACIDS RESEARCH
- Determination of the Gene Regulatory Network of a Genome-Reduced Bacterium Highlights Alternative Regulation Independent of Transcription Factors
- (2019) Eva Yus et al. Cell Systems
- Single‐cell characterization and metabolic profiling of in vitro cultured human skeletal progenitors with enhanced in vivo bone forming capacity
- (2019) Johanna Bolander et al. Stem Cells Translational Medicine
- Monosynaptic tracing maps brain-wide afferent oligodendrocyte precursor cell connectivity
- (2019) Christopher W Mount et al. eLife
- DrImpute: imputing dropout events in single cell RNA sequencing data
- (2018) Wuming Gong et al. BMC BIOINFORMATICS
- Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
- (2018) Kelly Street et al. BMC GENOMICS
- A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain
- (2018) Kristofer Davie et al. CELL
- Toward Minimal Residual Disease-Directed Therapy in Melanoma
- (2018) Florian Rambow et al. CELL
- Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data
- (2018) Jean Fan et al. GENOME RESEARCH
- Bias, robustness and scalability in single-cell differential expression analysis
- (2018) Charlotte Soneson et al. NATURE METHODS
- Myelin remodeling through experience-dependent oligodendrogenesis in the adult somatosensory cortex
- (2018) Ethan G. Hughes et al. NATURE NEUROSCIENCE
- A comprehensive evaluation of module detection methods for gene expression data
- (2018) Wouter Saelens et al. Nature Communications
- Dimensionality reduction for visualizing single-cell data using UMAP
- (2018) Etienne Becht et al. NATURE BIOTECHNOLOGY
- Revealing the Critical Regulators of Cell Identity in the Mouse Cell Atlas
- (2018) Shengbao Suo et al. Cell Reports
- IL11 is a crucial determinant of cardiovascular fibrosis
- (2017) Sebastian Schafer et al. NATURE
- Scaling single-cell genomics from phenomenology to mechanism
- (2017) Amos Tanay et al. NATURE
- SCENIC: single-cell regulatory network inference and clustering
- (2017) Sara Aibar et al. NATURE METHODS
- Single-cell mRNA quantification and differential analysis with Census
- (2017) Xiaojie Qiu et al. NATURE METHODS
- HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
- (2017) Ivan V Kulakovskiy et al. NUCLEIC ACIDS RESEARCH
- Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer
- (2017) Woosung Chung et al. Nature Communications
- Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution
- (2017) Hansruedi Mathys et al. Cell Reports
- Mapping Gene Expression in Excitatory Neurons during Hippocampal Late-Phase Long-Term Potentiation
- (2017) Patrick B. Chen et al. Frontiers in Molecular Neuroscience
- Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data
- (2017) Nicolas F. Fernandez et al. Scientific Data
- Single-Cell and Single-Molecule Analysis of Gene Expression Regulation
- (2016) Maria Vera et al. Annual Review of Genetics
- Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
- (2016) Itay Tirosh et al. NATURE
- Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
- (2016) Maxim V. Kuleshov et al. NUCLEIC ACIDS RESEARCH
- Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system
- (2016) S. Marques et al. SCIENCE
- Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
- (2016) I. Tirosh et al. SCIENCE
- Onco-Regulon: an integrated database and software suite for site specific targeting of transcription factors of cancer genes
- (2016) Navneet Tomar et al. Database-The Journal of Biological Databases and Curation
- The Transcriptional Activator Krüppel-like Factor-6 Is Required for CNS Myelination
- (2016) Benjamin M. Laitman et al. PLOS BIOLOGY
- Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
- (2015) Allon M. Klein et al. CELL
- Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation
- (2015) Aleksandra A. Kolodziejczyk et al. Cell Stem Cell
- A survey of human brain transcriptome diversity at the single cell level
- (2015) Spyros Darmanis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
- (2015) A. Zeisel et al. SCIENCE
- Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
- (2014) Alex A Pollen et al. NATURE BIOTECHNOLOGY
- Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing
- (2014) Dmitry Usoskin et al. NATURE NEUROSCIENCE
- DMINDA: an integrated web server for DNA motif identification and analyses
- (2014) Qin Ma et al. NUCLEIC ACIDS RESEARCH
- Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
- (2014) Q. Deng et al. SCIENCE
- iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections
- (2014) Rekin's Janky et al. PLoS Computational Biology
- A comparative analysis of biclustering algorithms for gene expression data
- (2012) K. Eren et al. BRIEFINGS IN BIOINFORMATICS
- Identification of a Gene Regulatory Network Necessary for the Initiation of Oligodendrocyte Differentiation
- (2011) Victoria A. Swiss et al. PLoS One
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started