标题
A comprehensive evaluation of module detection methods for gene expression data
作者
关键词
-
出版物
Nature Communications
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-03-09
DOI
10.1038/s41467-018-03424-4
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors
- (2016) Franziska Paul et al. CELL
- Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases
- (2016) Daniel Marbach et al. NATURE METHODS
- Using transcriptomics to guide lead optimization in drug discovery projects: Lessons learned from the QSTAR project
- (2015) Bie Verbist et al. DRUG DISCOVERY TODAY
- Targeted exploration and analysis of large cross-platform human transcriptomic compendia
- (2015) Qian Zhu et al. NATURE METHODS
- Comparing the performance of biomedical clustering methods
- (2015) Christian Wiwie et al. NATURE METHODS
- KEGG as a reference resource for gene and protein annotation
- (2015) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
- (2015) et al. SCIENCE
- BicOverlapper 2.0: visual analysis for gene expression
- (2014) R. Santamaria et al. BIOINFORMATICS
- Furby: fuzzy force-directed bicluster visualization
- (2014) Marc Streit et al. BMC BIOINFORMATICS
- Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin
- (2014) Katherine A. Hoadley et al. CELL
- Interactive notebooks: Sharing the code
- (2014) Helen Shen NATURE
- A narrow repertoire of transcriptional modules responsive to pyogenic bacteria is impaired in patients carrying loss-of-function mutations in MYD88 or IRAK4
- (2014) Laia Alsina et al. NATURE IMMUNOLOGY
- Gene Ontology Consortium: going forward
- (2014) NUCLEIC ACIDS RESEARCH
- ArabidopsisEnsemble Reverse-Engineered Gene Regulatory Network Discloses Interconnected Transcription Factors in Oxidative Stress
- (2014) Vanessa Vermeirssen et al. PLANT CELL
- Biclustering Methods: Biological Relevance and Application in Gene Expression Analysis
- (2014) Ali Oghabian et al. PLoS One
- De-Novo Learning of Genome-Scale Regulatory Networks in S. cerevisiae
- (2014) Sisi Ma et al. PLoS One
- Coherent Functional Modules Improve Transcription Factor Target Identification, Cooperativity Prediction, and Disease Association
- (2014) Konrad J. Karczewski et al. PLoS Genetics
- Dynamic regulatory network controlling TH17 cell differentiation
- (2013) Nir Yosef et al. NATURE
- Identification of transcriptional regulators in the mouse immune system
- (2013) Vladimir Jojic et al. NATURE IMMUNOLOGY
- COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia: Table 1.
- (2013) Pieter Meysman et al. NUCLEIC ACIDS RESEARCH
- Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks
- (2013) Sushmita Roy et al. PLoS Computational Biology
- A comparative analysis of biclustering algorithms for gene expression data
- (2012) K. Eren et al. BRIEFINGS IN BIOINFORMATICS
- Circuitry and Dynamics of Human Transcription Factor Regulatory Networks
- (2012) Shane Neph et al. CELL
- How Little Do We Actually Know? On the Size of Gene Regulatory Networks
- (2012) Richard Rottger et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease
- (2012) Luke Jostins et al. NATURE
- Architecture of the human regulatory network derived from ENCODE data
- (2012) Mark B. Gerstein et al. NATURE
- Wisdom of crowds for robust gene network inference
- (2012) Daniel Marbach et al. NATURE METHODS
- Transcription factors: from enhancer binding to developmental control
- (2012) François Spitz et al. NATURE REVIEWS GENETICS
- RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
- (2012) Heladia Salgado et al. NUCLEIC ACIDS RESEARCH
- An extensive comparative study of cluster validity indices
- (2012) Olatz Arbelaitz et al. PATTERN RECOGNITION
- GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods
- (2011) Thomas Schaffter et al. BIOINFORMATICS
- The self-assessment trap: can we all be better than average?
- (2011) R. Norel et al. Molecular Systems Biology
- Transcriptomic analysis of autistic brain reveals convergent molecular pathology
- (2011) Irina Voineagu et al. NATURE
- Crosstalk in NF-κB signaling pathways
- (2011) Andrea Oeckinghaus et al. NATURE IMMUNOLOGY
- Detecting Novel Associations in Large Data Sets
- (2011) D. N. Reshef et al. SCIENCE
- Integrating Genome-Wide Genetic Variations and Monocyte Expression Data Reveals Trans-Regulated Gene Modules in Humans
- (2011) Maxime Rotival et al. PLoS Genetics
- FABIA: factor analysis for bicluster acquisition
- (2010) Sepp Hochreiter et al. BIOINFORMATICS
- Partitioning biological data with transitivity clustering
- (2010) Tobias Wittkop et al. NATURE METHODS
- Advantages and limitations of current network inference methods
- (2010) Riet De Smet et al. NATURE REVIEWS MICROBIOLOGY
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus
- (2008) Damien Chaussabel et al. IMMUNITY
- A comparison of extrinsic clustering evaluation metrics based on formal constraints
- (2008) Enrique Amigó et al. Information Retrieval Journal
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started