Mapping Gene Expression in Excitatory Neurons during Hippocampal Late-Phase Long-Term Potentiation

Regulation of mRNA stability by ARE-binding proteins in synaptic plasticity and memory

(2015) Yong-Seok Lee et al.   NEUROBIOLOGY OF LEARNING AND MEMORY

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE

Multiple repressive mechanisms in the hippocampus during memory formation

(2015) J. Cho et al.   SCIENCE

Monitoring Astrocytic Proteome Dynamics by Cell Type-Specific Protein Labeling

(2015) Anke Müller et al.   PLoS One

An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex

(2014) Y. Zhang et al.   JOURNAL OF NEUROSCIENCE

A Positive Autoregulatory BDNF Feedback Loop via C/EBP  Mediates Hippocampal Memory Consolidation

(2014) D. Bambah-Mukku et al.   JOURNAL OF NEUROSCIENCE

The Neuronal Activity-Driven Transcriptome

(2014) Eva Benito et al.   MOLECULAR NEUROBIOLOGY

Cell type–specific mRNA purification by translating ribosome affinity purification (TRAP)

(2014) Myriam Heiman et al.   Nature Protocols

Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience

(2014) Joshua A. Ainsley et al.   Nature Communications

Mouse TU tagging: a chemical/genetic intersectional method for purifying cell type-specific nascent RNA

(2013) L. Gay et al.   GENES & DEVELOPMENT

A compendium of RNA-binding motifs for decoding gene regulation

(2013) Debashish Ray et al.   NATURE

Staufen1 senses overall transcript secondary structure to regulate translation

(2013) Emiliano P Ricci et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Molecular signatures and mechanisms of long-lasting memory consolidation and storage

(2013) Cynthia Katche et al.   NEUROBIOLOGY OF LEARNING AND MEMORY

Converging Mechanisms in ALS and FTD: Disrupted RNA and Protein Homeostasis

(2013) Shuo-Chien Ling et al.   NEURON

oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets

(2013) Andrew T. Kwon et al.   G3-Genes Genomes Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Widespread uncoupling between transcriptome and translatome variations after a stimulus in mammalian cells

(2012) Toma Tebaldi et al.   BMC GENOMICS

The Local Transcriptome in the Synaptic Neuropil Revealed by Deep Sequencing and High-Resolution Imaging

(2012) Iván J. Cajigas et al.   NEURON

Microglia Sculpt Postnatal Neural Circuits in an Activity and Complement-Dependent Manner

(2012) Dorothy P. Schafer et al.   NEURON

Temporal Profiling of Gene Networks Associated with the Late Phase of Long-Term Potentiation In Vivo

(2012) Margaret M. Ryan et al.   PLoS One

Cytoplasmic RNA-Binding Proteins and the Control of Complex Brain Function

(2012) J. C. Darnell et al.   Cold Spring Harbor Perspectives in Biology

Astrocyte-Neuron Lactate Transport Is Required for Long-Term Memory Formation

(2011) Akinobu Suzuki et al.   CELL

FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism

(2011) Jennifer C. Darnell et al.   CELL

Transcriptome-wide Analysis of Regulatory Interactions of the RNA-Binding Protein HuR

(2011) Svetlana Lebedeva et al.   MOLECULAR CELL

Spatio-temporal transcriptome of the human brain

(2011) Hyo Jung Kang et al.   NATURE

Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43

(2011) Magdalini Polymenidou et al.   NATURE NEUROSCIENCE

Hippocampal gene profiling: Toward a systems biology of the hippocampus

(2010) Luis M. Valor et al.   HIPPOCAMPUS

Widespread transcription at neuronal activity-regulated enhancers

(2010) Tae-Kyung Kim et al.   NATURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcription Factors in Long-Term Memory and Synaptic Plasticity

(2009) Cristina M. Alberini   PHYSIOLOGICAL REVIEWS

Cell-type-specific isolation of ribosome-associated mRNA from complex tissues

(2009) E. Sanz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

A Translational Profiling Approach for the Molecular Characterization of CNS Cell Types

(2008) Myriam Heiman et al.   CELL

Cadherins and synaptic plasticity

(2008) Chin-Yin Tai et al.   CURRENT OPINION IN CELL BIOLOGY

Kinase Networks Integrate Profiles ofN-Methyl-d-aspartate Receptor-mediated Gene Expression in Hippocampus

(2008) Marcelo P. Coba et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Motor protein–dependent transport of AMPA receptors into spines during long-term potentiation

(2008) Susana S Correia et al.   NATURE NEUROSCIENCE

MEF2C, a transcription factor that facilitates learning and memory by negative regulation of synapse numbers and function

(2008) A. C. Barbosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of protein synthesis during the labile phases of memory: Revisiting the skepticism

(2007) Cristina M. Alberini   NEUROBIOLOGY OF LEARNING AND MEMORY