Histone demethylase SlJMJ6 promotes fruit ripening by removing H3K27 methylation of ripening‐related genes in tomato

The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor

(2019) Shuzhi Zheng et al.   Nature Communications

The Histone H3K4 Demethylase JMJ16 Represses Leaf Senescence in Arabidopsis

(2019) Peng Liu et al.   PLANT CELL

The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis

(2019) Xiaolei Wang et al.   PLoS Genetics

Allelic H3K27me3 to allelic DNA methylation switch maintains noncanonical imprinting in extraembryonic cells

(2019) Zhiyuan Chen et al.   Science Advances

Brassinosteroid Signaling Recruits Histone 3 Lysine-27 Demethylation Activity to FLOWERING LOCUS C Chromatin to Inhibit the Floral Transition in Arabidopsis

(2018) Zicong Li et al.   Molecular Plant

WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice

(2018) Saifeng Cheng et al.   NUCLEIC ACIDS RESEARCH

Sulfoxidation Regulation of Musa acuminata Calmodulin (MaCaM) Influences the Functions of MaCaM-Binding Proteins

(2018) Guoxiang Jiang et al.   PLANT AND CELL PHYSIOLOGY

A critical evaluation of the role of ethylene and MADS transcription factors in the network controlling fleshy fruit ripening

(2018) Shan Li et al.   NEW PHYTOLOGIST

A NAC transcription factor, NOR-like1, is a new positive regulator of tomato fruit ripening

(2018) Ying Gao et al.   Horticulture Research

A histone deacetylase gene, SlHDA3, acts as a negative regulator of fruit ripening and carotenoid accumulation

(2017) Jun-E Guo et al.   PLANT CELL REPORTS

Silencing of histone deacetylase SlHDT3 delays fruit ripening and suppresses carotenoid accumulation in tomato

(2017) Jun-E Guo et al.   PLANT SCIENCE

Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit

(2017) Zhaobo Lang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic improvement of tomato by targeted control of fruit softening

(2016) Selman Uluisik et al.   NATURE BIOTECHNOLOGY

REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis

(2016) Xia Cui et al.   NATURE GENETICS

The molecular hallmarks of epigenetic control

(2016) C. David Allis et al.   NATURE REVIEWS GENETICS

Physical coupling of activation and derepression activities to maintain an active transcriptional state atFLC

(2016) Hongchun Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lowered H3K27me3 and DNA hypomethylation define poorly prognostic pediatric posterior fossa ependymomas

(2016) J. Bayliss et al.   Science Translational Medicine

Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14

(2015) Yong-Qiang Ning et al.   NUCLEIC ACIDS RESEARCH

A DEMETER-like DNA demethylase governs tomato fruit ripening

(2015) Ruie Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state

(2014) Pedro Crevillén et al.   NATURE

Tomato GOLDEN2-LIKE Transcription Factors Reveal Molecular Gradients That Function during Fruit Development and Ripening

(2014) C. V. Nguyen et al.   PLANT CELL

Jumonji demethylases moderate precocious flowering at elevated temperature via regulation of FLC in Arabidopsis

(2014) Eng-Seng Gan et al.   Nature Communications

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

A Large-Scale Identification of Direct Targets of the Tomato MADS Box Transcription Factor RIPENING INHIBITOR Reveals the Regulation of Fruit Ripening

(2013) M. Fujisawa et al.   PLANT CELL

Jumonji C Domain Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice

(2013) T. Li et al.   PLANT CELL

Structural Basis of a Histone H3 Lysine 4 Demethylase Required for Stem Elongation in Rice

(2013) Qingfeng Chen et al.   PLoS Genetics

The Tomato FRUITFULL Homologs TDR4/FUL1 and MBP7/FUL2 Regulate Ethylene-Independent Aspects of Fruit Ripening

(2012) M. Bemer et al.   PLANT CELL

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Identification of potential target genes for the tomato fruit-ripening regulator RIN by chromatin immunoprecipitation

(2011) Masaki Fujisawa et al.   BMC PLANT BIOLOGY

Arabidopsis REF6 is a histone H3 lysine 27 demethylase

(2011) Falong Lu et al.   NATURE GENETICS

Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening

(2011) R. Karlova et al.   PLANT CELL

Unraveling the regulatory network of the MADS box transcription factor RIN in fruit ripening

(2011) Guozheng Qin et al.   PLANT JOURNAL

The Tomato MADS-Box Transcription Factor RIPENING INHIBITOR Interacts with Promoters Involved in Numerous Ripening Processes in a COLORLESS NONRIPENING-Dependent Manner

(2011) C. Martel et al.   PLANT PHYSIOLOGY

Polycomb Group Complexes Mediate Developmental Transitions in Plants

(2011) S. Holec et al.   PLANT PHYSIOLOGY

Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor ( nor, rin ) and Ethylene Receptor ( Nr ) Mutants Reveals Novel Regulatory Interactions

(2011) Sonia Osorio et al.   PLANT PHYSIOLOGY

Direct targets of the tomato-ripening regulator RIN identified by transcriptome and chromatin immunoprecipitation analyses

(2011) Masaki Fujisawa et al.   PLANTA

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

An operational definition of epigenetics

(2009) S. L. Berger et al.   GENES & DEVELOPMENT

Modification of pectin polysaccharides during ripening of postharvest banana fruit

(2008) Xuewu Duan et al.   FOOD CHEMISTRY

DNA-binding specificity, transcriptional activation potential, and therinmutation effect for the tomato fruit-ripening regulator RIN

(2008) Yasuhiro Ito et al.   PLANT JOURNAL

Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development

(2008) Q. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY