Molecular mechanisms and future improvement of submergence tolerance in rice

Molecular Mechanisms of Root Development in Rice

(2019) Funing Meng et al.   Rice

Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence

(2019) Chih-Cheng Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq

(2019) Jing Yang et al.   BMC GENOMICS

Fine control of aerenchyma and lateral root development through AUX/IAA- and ARF-dependent auxin signaling

(2019) Takaki Yamauchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary flexibility in flooding response circuitry in angiosperms

(2019) Mauricio A. Reynoso et al.   SCIENCE

Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice

(2018) Qiang Zhao et al.   NATURE GENETICS

Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1 ) and contribute to flood tolerance

(2018) Yusuke Kurokawa et al.   NEW PHYTOLOGIST

Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding

(2018) Anzu Minami et al.   PLANT PHYSIOLOGY

Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding

(2018) Takeshi Kuroha et al.   SCIENCE

Genome Editing in Rice: Recent Advances, Challenges, and Future Implications

(2018) Rukmini Mishra et al.   Frontiers in Plant Science

Community recommendations on terminology and procedures used in flooding and low oxygen stress research

(2017) Rashmi Sasidharan et al.   NEW PHYTOLOGIST

Genetics, Physiological Mechanisms and Breeding of Flood-Tolerant Rice (Oryza sativaL.)

(2017) Anuradha Singh et al.   PLANT AND CELL PHYSIOLOGY

An NADPH Oxidase RBOH Functions in Rice Roots during Lysigenous Aerenchyma Formation under Oxygen-Deficient Conditions

(2017) Takaki Yamauchi et al.   PLANT CELL

Leaf gas films contribute to rice (Oryza sativa ) submergence tolerance during saline floods

(2017) Max Herzog et al.   PLANT CELL AND ENVIRONMENT

Rice SUB1A constrains remodelling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery

(2017) Anna M. Locke et al.   PLANT CELL AND ENVIRONMENT

Regulation of Root Traits for Internal Aeration and Tolerance to Soil Waterlogging-Flooding Stress

(2017) Takaki Yamauchi et al.   PLANT PHYSIOLOGY

RNA-Seq Analysis of Diverse Rice Genotypes to Identify the Genes Controlling Coleoptile Growth during Submerged Germination

(2017) Sheng-Kai Hsu et al.   Frontiers in Plant Science

eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice

(2017) Takeshi Kuroha et al.   Frontiers in Plant Science

Association Mapping Reveals Novel Genetic Loci Contributing to Flooding Tolerance during Germination in Indica Rice

(2017) Mengchen Zhang et al.   Frontiers in Plant Science

A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN-ACTIVATED PROTEIN KINASE3 Imparts Submergence Tolerance in Rice

(2016) Pallavi Singh et al.   PLANT CELL

A Tale of Two Sugars: Trehalose 6-Phosphate and Sucrose

(2016) Carlos M. Figueroa et al.   PLANT PHYSIOLOGY

Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

(2016) HyunJung Kim et al.   Rice

Ethylene is not involved in adaptive responses to flooding in the Amazonian wild rice species Oryza grandiglumis

(2015) Takuma Okishio et al.   JOURNAL OF PLANT PHYSIOLOGY

Flood adaptive traits and processes: an overview

(2015) Laurentius A. C. J. Voesenek et al.   NEW PHYTOLOGIST

The Physiology of Adventitious Roots

(2015) Bianka Steffens et al.   PLANT PHYSIOLOGY

Ethylene Biosynthesis Is Promoted by Very-Long-Chain Fatty Acids during Lysigenous Aerenchyma Formation in Rice Roots

(2015) Takaki Yamauchi et al.   PLANT PHYSIOLOGY

Ethylene-Mediated Acclimations to Flooding Stress

(2015) Rashmi Sasidharan et al.   PLANT PHYSIOLOGY

Genetic Mapping of Anaerobic Germination-Associated QTLs Controlling Coleoptile Elongation in Rice

(2015) Sheng-Kai Hsu et al.   Rice

A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice

(2015) Tobias Kretzschmar et al.   Nature Plants

Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa)

(2014) Katsuhiro Shiono et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biochemical and molecular characterization of rice (Oryza sativa L.) roots forming a barrier to radial oxygen loss

(2014) KONSTANTIN KULICHIKHIN et al.   PLANT CELL AND ENVIRONMENT

RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa)

(2014) Katsuhiro Shiono et al.   PLANT JOURNAL

The new frontier of genome engineering with CRISPR-Cas9

(2014) J. A. Doudna et al.   SCIENCE

QTL analysis of internode elongation in response to gibberellin in deepwater rice

(2014) K. Nagai et al.   AoB Plants

Complexity of indica-japonica varietal differentiation in Bangladesh rice landraces revealed by microsatellite markers

(2013) Mumu Wang et al.   BREEDING SCIENCE

SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway

(2013) Aaron J. Schmitz et al.   NEW PHYTOLOGIST

Ethylene - and oxygen signalling - drive plant survival during flooding

(2013) L. A. C. J. Voesenek et al.   PLANT BIOLOGY

QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red

(2013) Endang M. Septiningsih et al.   THEORETICAL AND APPLIED GENETICS

Quiescence in rice submergence tolerance: an evolutionary hypothesis

(2013) Chiara Pucciariello et al.   TRENDS IN PLANT SCIENCE

Two novel QTLs regulate internode elongation in deepwater rice during the early vegetative stage

(2012) Keisuke Nagai et al.   BREEDING SCIENCE

Convergent Starvation Signals and Hormone Crosstalk in Regulating Nutrient Mobilization upon Germination in Cereals

(2012) Y.-F. Hong et al.   PLANT CELL

Emerging Roots Alter Epidermal Cell Fate through Mechanical and Reactive Oxygen Species Signaling

(2012) B. Steffens et al.   PLANT CELL

SUB1A-dependent and -independent mechanisms are involved in the flooding tolerance of wild rice species

(2012) Raj Kumar Niroula et al.   PLANT JOURNAL

Waterproofing Crops: Effective Flooding Survival Strategies

(2012) J. Bailey-Serres et al.   PLANT PHYSIOLOGY

Distinct mechanisms for aerenchyma formation in leaf sheaths of rice genotypes displaying a quiescence or escape strategy for flooding tolerance

(2011) S. Parlanti et al.   ANNALS OF BOTANY

Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence

(2011) Hirokazu Takahashi et al.   ANNALS OF BOTANY

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

Artificial selection for a green revolution gene during japonica rice domestication

(2011) K. Asano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Superhydrophobicity in perfection: the outstanding properties of the lotus leaf

(2011) Hans J Ensikat et al.   Beilstein Journal of Nanotechnology

A perspective on underwater photosynthesis in submerged terrestrial wetland plants

(2011) Timothy D. Colmer et al.   AoB Plants

Contrasting dynamics of radial O2-loss barrier induction and aerenchyma formation in rice roots of two lengths

(2010) Katsuhiro Shiono et al.   ANNALS OF BOTANY

Life in the balance: a signaling network controlling survival of flooding

(2010) Julia Bailey-Serres et al.   CURRENT OPINION IN PLANT BIOLOGY

Rice growth adapting to deepwater

(2010) Yoko Hattori et al.   CURRENT OPINION IN PLANT BIOLOGY

Stunt or elongate? Two opposite strategies by which rice adapts to floods

(2010) Keisuke Nagai et al.   JOURNAL OF PLANT RESEARCH

Aerenchyma formation in the rice stem and its promotion by H2O2

(2010) Bianka Steffens et al.   NEW PHYTOLOGIST

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

Submergence Tolerant Rice: SUB1’s Journey from Landrace to Modern Cultivar

(2010) Julia Bailey-Serres et al.   Rice

QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)

(2009) S. Abdolhamid Angaji et al.   EUPHYTICA

Flooding tolerance: suites of plant traits in variable environments

(2009) T. D. Colmer et al.   FUNCTIONAL PLANT BIOLOGY

Functional and chemical comparison of apoplastic barriers to radial oxygen loss in roots of rice (Oryza sativa L.) grown in aerated or deoxygenated solution

(2009) Lukasz Kotula et al.   JOURNAL OF EXPERIMENTAL BOTANY

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

(2009) Yoko Hattori et al.   NATURE

Superhydrophobic and superhydrophilic plant surfaces: an inspiration for biomimetic materials

(2009) K. Koch et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Epidermal Cell Death in Rice Is Confined to Cells with a Distinct Molecular Identity and Is Mediated by Ethylene and H2O2 through an Autoamplified Signal Pathway

(2009) B. Steffens et al.   PLANT CELL

Coordinated Responses to Oxygen and Sugar Deficiency Allow Rice Seedlings to Tolerate Flooding

(2009) K.-W. Lee et al.   Science Signaling

Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice

(2008) Takeshi Fukao et al.   ANNALS OF BOTANY

Rice germination and seedling growth in the absence of oxygen

(2008) Leonardo Magneschi et al.   ANNALS OF BOTANY

Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa)

(2008) Abdelbagi M. Ismail et al.   ANNALS OF BOTANY

Flooding Stress: Acclimations and Genetic Diversity

(2008) J. Bailey-Serres et al.   Annual Review of Plant Biology

Mapping of QTLs for floating ability in rice

(2008) Ritsuko Kawano et al.   BREEDING SCIENCE

Mapping of three QTLs that regulate internode elongation in deepwater rice

(2008) Yoko Hattori et al.   BREEDING SCIENCE

Oxygen dynamics in submerged rice (Oryza sativa)

(2008) T. D. Colmer et al.   NEW PHYTOLOGIST

Surviving floods: leaf gas films improve O2 and CO2 exchange, root aeration, and growth of completely submerged rice

(2008) Ole Pedersen et al.   PLANT JOURNAL

Role of ethylene in acclimations to promote oxygen transport in roots of plants in waterlogged soils

(2008) Katsuhiro Shiono et al.   PLANT SCIENCE

Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice

(2008) T. Fukao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA