Genetic Mapping of Anaerobic Germination-Associated QTLs Controlling Coleoptile Elongation in Rice

The Tyrosine Aminomutase TAM1 Is Required for β-Tyrosine Biosynthesis in Rice

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A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice

(2015) Tobias Kretzschmar et al.   Nature Plants

QTL mapping for tolerance of anaerobic germination from IR64 and the aus landrace Nanhi using SNP genotyping

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Substantial roles of hexokinase and fructokinase in the effects of sugars on plant physiology and development

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Differential anoxic expression of sugar-regulated genes reveals diverse interactions between sugar and anaerobic signaling systems in rice

(2013) Mi-na Lim et al.   MOLECULES AND CELLS

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red

(2013) Endang M. Septiningsih et al.   THEORETICAL AND APPLIED GENETICS

Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.)

(2013) Berta Miro et al.   Frontiers in Plant Science

Hexose Kinases and Their Role in Sugar-Sensing and Plant Development

(2013) David Granot et al.   Frontiers in Plant Science

GAPIT: genome association and prediction integrated tool

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Hexokinase-mediated sugar signaling controls expression of the calcineurin B-like interacting protein kinase 15 gene and is perturbed by oxidative phosphorylation inhibition

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Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

(2011) Adam N. Famoso et al.   PLoS Genetics

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

R/qtl: high-throughput multiple QTL mapping: Fig. 1.

(2010) Danny Arends et al.   BIOINFORMATICS

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)

(2009) S. Abdolhamid Angaji et al.   EUPHYTICA

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

(2009) Yoko Hattori et al.   NATURE

Functional Analyses of LONELY GUY Cytokinin-Activating Enzymes Reveal the Importance of the Direct Activation Pathway in Arabidopsis

(2009) T. Kuroha et al.   PLANT CELL

Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa)

(2008) Abdelbagi M. Ismail et al.   ANNALS OF BOTANY

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Comparative analysis of anoxic coleoptile elongation in rice varieties: relationship between coleoptile length and carbohydrate levels, fermentative metabolism and anaerobic gene expression

(2008) L. Magneschi et al.   PLANT BIOLOGY

Experimental Analysis of the Rice Mitochondrial Proteome, Its Biogenesis, and Heterogeneity

(2008) S. Huang et al.   PLANT PHYSIOLOGY

Role of the Rice Hexokinases OsHXK5 and OsHXK6 as Glucose Sensors

(2008) J.-I. Cho et al.   PLANT PHYSIOLOGY

Ethylene—A key regulator of submergence responses in rice

(2007) Takeshi Fukao et al.   PLANT SCIENCE